RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 OR5C1Q8NGR4 320 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 BSCL2Q96G97 398 aaPredicted RBP12.93□□□□□ -0.34
COL17A1-201ENST00000353479 SIP14410 1827 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 LANCL1O43813 399 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 SLC6A1P30531 599 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 BARX1Q9HBU1 254 aaPredicted RBP12.93□□□□□ -0.34
COL17A1-201ENST00000353479 ZNF629Q9UEG4 869 aaPredicted RBP12.93□□□□□ -0.34
COL17A1-201ENST00000353479 METTL15P1P0C7V9 234 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 NUBP1P53384 320 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 ZFP36L1Q07352 338 aaKnown RBP12.93□□□□□ -0.34
COL17A1-201ENST00000353479 SCGB2A2Q13296 93 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 SURF2Q15527 256 aaPredicted RBP12.93□□□□□ -0.34
COL17A1-201ENST00000353479 ETV3LQ6ZN32 361 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 FAM122BQ7Z309 247 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 TGIF2LYQ8IUE0 185 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 TGIF2LXQ8IUE1 241 aa12.93□□□□□ -0.34
COL17A1-201ENST00000353479 NEIL1Q96FI4 390 aaPredicted RBP12.93□□□□□ -0.34
COL17A1-201ENST00000353479 PCDHGA9Q9Y5G4 932 aaKnown RBP12.93□□□□□ -0.34
COL17A1-201ENST00000353479 A0A1W2PN81 502 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 A0A1W2PPE3 182 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 CHRNA7P36544 502 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 AKR1E2Q96JD6 320 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 SOX15O60248 233 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 CA11O75493 328 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 CFHR1Q03591 330 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 DIRC2Q96SL1 478 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 ZNF785A8K8V0 405 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 TIGITQ495A1 244 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 AVPI1Q5T686 147 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 HIST2H3AQ71DI3 136 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 OR13D1Q8NGV5 346 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 MITD1Q8WV92 249 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 TVP23CQ96ET8 276 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 PCGF1Q9BSM1 259 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 SEBOXQ9HB31 216 aaPredicted RBP12.92□□□□□ -0.34
COL17A1-201ENST00000353479 A0A1W2PP11 408 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 NUDT19A8MXV4 375 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 MPC2O95563 127 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 FSTP19883 344 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 RAB5CP51148 216 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 NFAM1Q8NET5 270 aaPredicted RBP12.92□□□□□ -0.34
COL17A1-201ENST00000353479 NDFIP1Q9BT67 221 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 ZMIZ1Q9ULJ6 1067 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 GAB2Q9UQC2 676 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 OR2W1Q9Y3N9 320 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 COL4A6Q14031 1691 aa12.92□□□□□ -0.34
COL17A1-201ENST00000353479 HOXB1P14653 301 aaPredicted RBP12.91□□□□□ -0.34
COL17A1-201ENST00000353479 WNT5BQ9H1J7 359 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 INSIG2Q9Y5U4 225 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 VWA8A3KMH1 1905 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 IGLV3-12A0A075B6K2 115 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 TRBV5-5A0A0J9YX44 114 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 ETFRF1Q6IPR1 90 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 OR4A4PQ8NGN8 299 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 NTNG2Q96CW9 530 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 NPIPB9F8W1W9 429 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 IGHMP01871 453 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 PPP1CCP36873 323 aaKnown RBP12.91□□□□□ -0.34
COL17A1-201ENST00000353479 TNFSF10P50591 281 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 POLR2GP62487 172 aaKnown RBP eCLIP12.91□□□□□ -0.34
COL17A1-201ENST00000353479 TMEM41BQ5BJD5 291 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 VSTM2AQ8TAG5 236 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 BTF3L4Q96K17 158 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 SMCO4Q9NRQ5 59 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 FAM206AQ9NX38 181 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 FFAR4Q5NUL3 377 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 ARID1AO14497 2285 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 NAT2P11245 290 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 OR2C3Q8N628 320 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 BPIFCQ8NFQ6 507 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 TMEM54Q969K7 222 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 PGLYRP3Q96LB9 341 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 PATZ1Q9HBE1 687 aaKnown RBP12.91□□□□□ -0.34
COL17A1-201ENST00000353479 SLC2A9Q9NRM0 540 aa12.91□□□□□ -0.34
COL17A1-201ENST00000353479 ZIC3O60481 467 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 DUSP18Q8NEJ0 188 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 TOX4O94842 621 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 FAHD2BQ6P2I3 314 aaPredicted RBP12.9□□□□□ -0.34
COL17A1-201ENST00000353479 OR8G5Q8NG78 346 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 FAHD2AQ96GK7 314 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 FNDC1Q4ZHG4 1894 aaPredicted RBP12.9□□□□□ -0.34
COL17A1-201ENST00000353479 SYNGR1O43759 233 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 ICMTO60725 284 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 CLDN14O95500 239 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 CST4P01036 141 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 AKR1C3P42330 323 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 KLF14Q8TD94 323 aaPredicted RBP12.9□□□□□ -0.34
COL17A1-201ENST00000353479 KLK13Q9UKR3 277 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 H7BYZ3 331 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 NTN3O00634 580 aaPredicted RBP12.9□□□□□ -0.34
COL17A1-201ENST00000353479 REG1BP48304 166 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 FGF12P61328 243 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 ZNF658BQ4V348 819 aaPredicted RBP12.9□□□□□ -0.34
COL17A1-201ENST00000353479 LINC01590Q5TEZ4 76 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 THYN1Q9P016 225 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 OR1A1Q9P1Q5 309 aa12.9□□□□□ -0.34
COL17A1-201ENST00000353479 ISG15P05161 165 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 IL13RA2Q14627 380 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 VWA1Q6PCB0 445 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 CLEC2AQ6UVW9 174 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms