RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RBM7Q9Y580 266 aaKnown RBP8.82□□□□□ -1
LIMA1-201ENST00000341247 TRAV24A0A0B4J272 114 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 ADAM20O43506 726 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 ZNF16P17020 682 aaPredicted RBP8.82□□□□□ -1
LIMA1-201ENST00000341247 IGHV1-2P23083 117 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 TAGLNQ01995 201 aaKnown RBP8.82□□□□□ -1
LIMA1-201ENST00000341247 CXorf66Q5JRM2 361 aaPredicted RBP8.82□□□□□ -1
LIMA1-201ENST00000341247 PUSL1Q8N0Z8 303 aaKnown RBP8.82□□□□□ -1
LIMA1-201ENST00000341247 C18orf12Q96KH6 178 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 RHOFQ9HBH0 211 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 LUZP4Q9P127 313 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 ATPIF1Q9UII2 106 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 INTS1Q8N201 2190 aaKnown RBP8.81□□□□□ -1
LIMA1-201ENST00000341247 DEGS1O15121 323 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 ST8SIA3O43173 380 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 SSSCA1O60232 199 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 COX5BP10606 129 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 MUC1P15941 1255 aaPredicted RBP8.81□□□□□ -1
LIMA1-201ENST00000341247 SWI5Q1ZZU3 235 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 TBC1D28Q2M2D7 210 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 DEFB109BQ30KR1 87 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 VWA1Q6PCB0 445 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 TMEM217Q8N7C4 229 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 NANOS1Q8WY41 292 aaKnown RBP8.81□□□□□ -1
LIMA1-201ENST00000341247 USB1Q9BQ65 265 aaKnown RBP8.81□□□□□ -1
LIMA1-201ENST00000341247 RSRP1Q9BUV0 290 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 TMEM100Q9NV29 134 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 OR1A1Q9P1Q5 309 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 ERRFI1Q9UJM3 462 aaPredicted RBP8.81□□□□□ -1
LIMA1-201ENST00000341247 DCHS2Q6V1P9 2916 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 HEATR1Q9H583 2144 aaKnown RBP8.81□□□□□ -1
LIMA1-201ENST00000341247 E5RGE8 158 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 ATG12O94817 140 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 NAPSAO96009 420 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 CD80P33681 288 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 ZNF826PQ6ZT77 177 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 WDR86Q86TI4 376 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 ZNF573Q86YE8 665 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 CBLN2Q8IUK8 224 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 OR1J1Q8NGS3 322 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 SLC25A40Q8TBP6 338 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 TINAGQ9UJW2 476 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 NSG2Q9Y328 171 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 ROS1P08922 2347 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 H7C1Q1 480 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 HSPA12AO43301 675 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 PRH1P02810 166 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 GLAP06280 429 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 OR8U9P0C7N5 309 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 PPP1CBP62140 327 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 OR8U1Q8NH10 309 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 MRPL30Q8TCC3 161 aaKnown RBP8.81□□□□□ -1
LIMA1-201ENST00000341247 BCL2L14Q9BZR8 327 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 UFSP2Q9NUQ7 469 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 DLL3Q9NYJ7 618 aa8.81□□□□□ -1
LIMA1-201ENST00000341247 TRDCB7Z8K6 153 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 H3BP45 60 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 DNASE2O00115 360 aaPredicted RBP8.8□□□□□ -1
LIMA1-201ENST00000341247 CST7O76096 145 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 GNMTQ14749 295 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 LDLRAD3Q86YD5 345 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 RNF122Q9H9V4 155 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 PROB1E7EW31 1015 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 TOR1AO14656 332 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 PJVKQ0ZLH3 352 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 FAM53AQ6NSI3 398 aaPredicted RBP8.8□□□□□ -1
LIMA1-201ENST00000341247 SCCPDHQ8NBX0 429 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 RNASE11Q8TAA1 199 aaKnown RBP8.8□□□□□ -1
LIMA1-201ENST00000341247 TMEM222Q9H0R3 208 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 ZDHHC11Q9H8X9 412 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 OBP2BQ9NPH6 170 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 MUC6Q6W4X9 2439 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 RAB19A4D1S5 217 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 SS18L1O75177 396 aaPredicted RBP8.8□□□□□ -1
LIMA1-201ENST00000341247 NXPH2O95156 264 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 MPV17P39210 176 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 AKR1C3P42330 323 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 FOXF2Q12947 444 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 MMP26Q9NRE1 261 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 UQCC1Q9NVA1 299 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 KCNS2Q9ULS6 477 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 PPP1R3CQ9UQK1 317 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 ATP23Q9Y6H3 246 aa8.8□□□□□ -1
LIMA1-201ENST00000341247 A6NLC8 198 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 C9JQL5 133 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 TAAR5O14804 337 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 WNT9BO14905 357 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 SMPD2O60906 423 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 JTBO76095 146 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 CNOT4O95628 575 aaKnown RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 NKX2-1P43699 371 aaPredicted RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 FABP6P51161 128 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 EIF5AP63241 154 aaKnown RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 MPV17LQ2QL34 196 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 EIF5AL1Q6IS14 154 aaKnown RBP8.79□□□□□ -1
LIMA1-201ENST00000341247 DMBX1Q8NFW5 382 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 OR10J5Q8NHC4 309 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 OR51I2Q9H344 312 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 TRAPPC2LQ9UL33 140 aa8.79□□□□□ -1
LIMA1-201ENST00000341247 ZNF175Q9Y473 711 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms