RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TMPRSS5Q9H3S3 457 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 CDH20Q9HBT6 801 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 A0A1B0GTQ1 180 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 A0A1W2PPQ1 181 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 ZIC3O60481 467 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 PPYP01298 95 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 ZNF17P17021 662 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 CLN3Q13286 438 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 PCOLCEQ15113 449 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 BTNL3Q6UXE8 466 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 NINJ1Q92982 152 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 TP53RKQ96S44 253 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 HSF4Q9ULV5 492 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 MUC3AQ02505 3323 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 SMIM6P0DI80 62 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 RAB5AP20339 215 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 SULT1A1P50225 295 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 DYNLT3P51808 116 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 HGFACQ04756 655 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 EXT1Q16394 746 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 ZNF528Q3MIS6 628 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 KMT5CQ86Y97 462 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 FAM131CQ96AQ9 280 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 CABLES2Q9BTV7 478 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 RSG1Q9BU20 258 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 NMES1Q9C002 83 aa10.34□□□□□ -0.75
USP1-201ENST00000339950 C3orf85A0A1B0GTC6 90 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 ZP4Q12836 540 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 ARL6IP1Q15041 203 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 PNLIPRP3Q17RR3 467 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 OR10J5Q8NHC4 309 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 WBP1Q96G27 269 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 BOKQ9UMX3 212 aaPredicted RBP10.33□□□□□ -0.76
USP1-201ENST00000339950 H0YL77 283 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 CDIPTO14735 213 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 PDCD6O75340 191 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 TBPP20226 339 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 PLA2G5P39877 138 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 UBE2G2P60604 165 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 OR2C3Q8N628 320 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 ZNF441Q8N8Z8 693 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 OR2Y1Q8NGV0 311 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 STRADBQ9C0K7 418 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 GPR27Q9NS67 375 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 IGKV1-12A0A0C4DH73 117 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 PROB1E7EW31 1015 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 AGFG2O95081 481 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 IGKV1D-12P01611 117 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 MBP02144 154 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 OPN1MWP04001 364 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 OPN1MW2P0DN77 364 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 OPN1MW3P0DN78 364 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 C6orf15Q6UXA7 325 aaPredicted RBP10.33□□□□□ -0.76
USP1-201ENST00000339950 ZNF826PQ6ZT77 177 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 SAP25Q8TEE9 199 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 SAMD10Q9BYL1 202 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 FAM117AQ9C073 453 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 TCFL5Q9UL49 500 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 BOD1L1Q8NFC6 3051 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 IGKV1-27A0A075B6S5 117 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 ACAA1P09110 424 aaPredicted RBP10.33□□□□□ -0.76
USP1-201ENST00000339950 RAC3P60763 192 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 PCBD1P61457 104 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 CT55Q8WUE5 264 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 TMEM204Q9BSN7 226 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 TMEM38BQ9NVV0 291 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 CACNG5Q9UF02 275 aa10.33□□□□□ -0.76
USP1-201ENST00000339950 LDLRAD4O15165 306 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 UMODP07911 640 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 DEFA4P12838 97 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 CSRP1P21291 193 aaKnown RBP10.32□□□□□ -0.76
USP1-201ENST00000339950 ATP6V0CP27449 155 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 EDDM3BP56851 147 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 RAB35Q15286 201 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 OR1C1Q15619 314 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 GPR61Q9BZJ8 451 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 OR2H1Q9GZK4 316 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 IL17BQ9UHF5 180 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 NUP210Q8TEM1 1887 aaPredicted RBP10.32□□□□□ -0.76
USP1-201ENST00000339950 FIGNL2A6NMB9 653 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 MELTFP08582 738 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 NTF4P34130 210 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 DVL1P1P54792 670 aaPredicted RBP10.32□□□□□ -0.76
USP1-201ENST00000339950 DEFB123Q8N688 67 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 ZNF709Q8N972 641 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 EDEM2Q9BV94 578 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 LIME1Q9H400 295 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 RCC2Q9P258 522 aaKnown RBP10.32□□□□□ -0.76
USP1-201ENST00000339950 PINLYPA6NC86 204 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 SERPINA7P05543 415 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 ZDHHC23Q8IYP9 409 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 CCDC54Q8NEL0 328 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 ASB13Q8WXK3 278 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 SEC11CQ9BY50 192 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 GPR35Q9HC97 309 aa10.32□□□□□ -0.76
USP1-201ENST00000339950 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.31□□□□□ -0.763e-6■■■■□ 20.7
USP1-201ENST00000339950 CCL20P78556 96 aa10.31□□□□□ -0.76
USP1-201ENST00000339950 ZNF610Q8N9Z0 462 aa10.31□□□□□ -0.76
USP1-201ENST00000339950 ZNF552Q9H707 407 aaPredicted RBP10.31□□□□□ -0.76
USP1-201ENST00000339950 LAMP3Q9UQV4 416 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms