RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ZNF774Q6NX45 483 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 TMEM222Q9H0R3 208 aa9.06□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM24AA6NFZ4 105 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 J3QW42 95 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 RPLP1P05386 114 aaKnown RBP9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 CRYBA1P05813 215 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 CRISP2P16562 243 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 TRAV8-7A0A075B6U6 113 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 NRG2O14511 850 aaPredicted RBP9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 HLA-BQ31612 363 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF468Q5VIY5 522 aaPredicted RBP9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM27BQ5VT28 67 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 ETV3LQ6ZN32 361 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 MIOXQ9UGB7 285 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF32P17041 273 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 LPAR6P43657 344 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 OR5AS1Q8N127 324 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 OR2D2Q9H210 308 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 SLC26A1Q9H2B4 701 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 OR51M1Q9H341 326 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 AMDHD2Q9Y303 409 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 HIST1H1EP10412 219 aaKnown RBP9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 PRRX1P54821 245 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 RCC2Q9P258 522 aaKnown RBP9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 WNT16Q9UBV4 365 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 ARL2-SNX15V9GYD0 113 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 CLEC3BP05452 202 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 PABPC1L2AQ5JQF8 200 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 OR2Y1Q8NGV0 311 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 OR10D3Q8NH80 312 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 ADAM11O75078 769 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 VSIG8P0DPA2 414 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 BRS3P32247 399 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF660Q6AZW8 331 aaPredicted RBP9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 OR5AU1Q8NGC0 362 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 LIPGQ9Y5X9 500 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 AQP7O14520 342 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 OR5I1Q13606 314 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 GPR27Q9NS67 375 aa9.05□□□□□ -0.96
CCDC88A-202ENST00000336838 LOC390937A0A1W2PQ73 354 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 PDPNQ86YL7 162 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 COMPP49747 757 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 MEF2BQ02080 365 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF816Q0VGE8 651 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 RNF122Q9H9V4 155 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 BARX1Q9HBU1 254 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 CACNA1EQ15878 2313 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 A0A096LPE4 126 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 A0A1W2PPZ6 126 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 USF1P22415 310 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 RPS11P62280 158 aaKnown RBP eCLIP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 EWSR1Q01844 656 aaKnown RBP eCLIP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 VHLLQ6RSH7 139 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 OR52L2PQ8NGH6 319 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 PRSS27Q9BQR3 290 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM117AQ9C073 453 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 IGHV5-51A0A0C4DH38 117 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 LOC102723971A0A1B0GUV8 181 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 RPL36A-HNRNPH2H7BZ11 118 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 KCNAB3O43448 404 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 ONECUT2O95948 504 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 TDHQ8IZJ6 230 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 C10orf111Q8N326 155 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 OR1L1Q8NH94 360 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 CDK2AP1O14519 115 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 F2RP25116 425 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 AMTP48728 403 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 TUSC1Q2TAM9 212 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 DHRS7BQ6IAN0 325 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 LRFN3Q9BTN0 628 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 MAP1LC3CQ9BXW4 147 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 OR1C1Q15619 314 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 PSMG4Q5JS54 123 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 AMER3Q8N944 861 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 SCCPDHQ8NBX0 429 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 SNX22Q96L94 193 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 PSMG3Q9BT73 122 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 NUP210Q8TEM1 1887 aaPredicted RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 CT62P0C5K7 136 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 CEACAM3P40198 252 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 NPTNQ9Y639 398 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 NCBP2LA6PVI3 153 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 TCTN1Q2MV58 587 aa9.04□□□□□ -0.96
CCDC88A-202ENST00000336838 CRYM-AS1A6NIL9 109 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 HOXB1P14653 301 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 SP6Q3SY56 376 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 DOLPP1Q86YN1 238 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 OR4B1Q8NGF8 309 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM216AQ8WUB2 273 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 TMEM37Q8WXS4 190 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM103A1Q9BTL3 118 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 OR2H1Q9GZK4 316 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 TRGV5A0A0B4J1U4 118 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 CXCL2P19875 107 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 UCP3P55916 312 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 HES1Q14469 280 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 CD226Q15762 336 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 ATG101Q9BSB4 218 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 DMRT1Q9Y5R6 373 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 HLA-DQA1P01909 254 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms