RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 FAM172BPA6NC97 362 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 MGST3O14880 152 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 NDUFA2O43678 99 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 IGHV2-5P01817 119 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 GDNFP39905 211 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 DLX1P56177 255 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 BAIAP2L2Q6UXY1 529 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 BTN2A1Q7KYR7 527 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 RFESDQ8TAC1 157 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 SMIM4Q8WVI0 70 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 IL1F10Q8WWZ1 152 aa12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 NUDT16L1Q9BRJ7 211 aaKnown RBP12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 SSBP3Q9BWW4 388 aaPredicted RBP12.76□□□□□ -0.37
PDLIM5-202ENST00000318007 ITPR3Q14573 2671 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 OTOGQ6ZRI0 2925 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 A0A1W2PQ09 198 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 TMEM30CPA0ZSE6 113 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 GABARAPH6UMI1 98 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 ORC5O43913 435 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 IGHV3-7P01780 117 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 CD40LGP29965 261 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 INPP1P49441 399 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 PPP5CP53041 499 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 P2RX3P56373 397 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 RPL31P62899 125 aaKnown RBP12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 ZNF273Q14593 569 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 ESCO2Q56NI9 601 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 TRIQKQ629K1 86 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 WDR25Q64LD2 544 aaPredicted RBP12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 ZNF57Q68EA5 555 aaPredicted RBP12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 FAM53AQ6NSI3 398 aaPredicted RBP12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 KRTAP1-3Q8IUG1 177 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 GPX8Q8TED1 209 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 NINJ1Q92982 152 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 KAAG1Q9UBP8 84 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 MALRD1Q5VYJ5 2156 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 DOCK11Q5JSL3 2073 aa12.75□□□□□ -0.37
PDLIM5-202ENST00000318007 ODAMA1E959 279 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 VWC2LB2RUY7 222 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 NDUFS8O00217 210 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 RBBP9O75884 186 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 MT-ND4P03905 459 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 MELTFP08582 738 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 IL7P13232 177 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 CCL3L1P16619 93 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 ZFP36P26651 326 aaKnown RBP12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 PNLIPRP3Q17RR3 467 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 OR5D13Q8NGL4 314 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 SNAPC3Q92966 411 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 DNTTIP1Q9H147 329 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 TEX15Q9BXT5 2789 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 FAM157AC9JC47 383 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 M0QYG6 137 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 NAPSAO96009 420 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 SCTP09683 121 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 RFX2P48378 723 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 LMO4P61968 165 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 IFITM3Q01628 133 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 C16orf87Q6PH81 154 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 DNM1P46Q6ZS02 220 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 LINC00299Q6ZSB3 139 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 TCF23Q7RTU1 214 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 LRRC75A-AS1Q8N1F1 130 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 BEST4Q8NFU0 473 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 OR4D10Q8NGI6 311 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 MBD6Q96DN6 1003 aa12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.74□□□□□ -0.371e-6■■■■■ 27
PDLIM5-202ENST00000318007 YLPM1P49750 1951 aaKnown RBP12.74□□□□□ -0.37
PDLIM5-202ENST00000318007 ABCA2Q9BZC7 2435 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 IGHV3-43A0A0B4J1X8 118 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 C22orf46C9J442 243 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 SDCBPO00560 298 aaPredicted RBP12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 SMAD7O15105 426 aaKnown RBP12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 PMP2P02689 132 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 IGHV3-43DP0DP04 118 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 ARL6IP1Q15041 203 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 GDPD1Q8N9F7 314 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 TRIM63Q969Q1 353 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 KIRREL1Q96J84 757 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 FAM234AQ9H0X4 552 aa12.73□□□□□ -0.37
PDLIM5-202ENST00000318007 H3BUI4 141 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 BET1O15155 118 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 CD3DP04234 171 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 GSTT2P0CG29 244 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 GSTT2BP0CG30 244 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 IGSF11Q5DX21 431 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 SLC35E4Q6ICL7 350 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 TAF9BQ9HBM6 251 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 FLNAP21333 2647 aaKnown RBP12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 MYO9AB2RTY4 2548 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 CTDSPLO15194 276 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 USF1P22415 310 aaPredicted RBP12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 HRH1P35367 487 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 DSCR9P59020 149 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 ARPC4P59998 168 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 STEAP3Q658P3 488 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 TMEM200BQ69YZ2 307 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 CIARTQ8N365 385 aaPredicted RBP12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 TOMM5Q8N4H5 51 aa12.72□□□□□ -0.37
PDLIM5-202ENST00000318007 OR1L1Q8NH94 360 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms