RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TSPAN15O95858 294 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 IGHV3-7P01780 117 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 CD1AP06126 327 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 CGB3P0DN86 165 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 CGB7P0DN87 165 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 SSTR5P35346 364 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 DYNLT3P51808 116 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 BDH1Q02338 343 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 RBM39Q14498 530 aaKnown RBP13.11□□□□□ -0.31
LSM1-201ENST00000311351 LTC4SQ16873 150 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 HLA-DRB5Q30154 266 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 FBLN7Q53RD9 439 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 RTN4RL2Q86UN3 420 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 KLHDC1Q8N7A1 406 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 ZNF596Q8TC21 504 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 LEAP2Q969E1 77 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 BARHL1Q9BZE3 327 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 DPM3Q9P2X0 92 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 LSM2Q9Y333 95 aaKnown RBP13.11□□□□□ -0.31
LSM1-201ENST00000311351 NOTCH1P46531 2555 aa13.11□□□□□ -0.31
LSM1-201ENST00000311351 A0A087X0M5 115 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 A0A1B0GX30 115 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 M0QZ24 198 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 IL1AP01583 271 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 CD24P25063 80 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 KCNJ3P48549 501 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 PAX5Q02548 391 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 ATAD3CQ5T2N8 411 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 FAM27D1Q5T7N8 215 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 AWAT2Q6E213 333 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 GLIPR1L1Q6UWM5 242 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 C11orf44Q8N8P7 122 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 RFESDQ8TAC1 157 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 CYYR1Q96J86 154 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 IFT22Q9H7X7 185 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 PITPNC1Q9UKF7 332 aa13.1□□□□□ -0.31
LSM1-201ENST00000311351 TOR1AO14656 332 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 ZNF780AO75290 641 aaPredicted RBP13.09□□□□□ -0.31
LSM1-201ENST00000311351 ATP6V1G2O95670 118 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 VSIG10L2P0DP72 767 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 GTF2F2P13984 249 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 SLC35A2P78381 396 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 MPV17LQ2QL34 196 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 TPTE2P1Q5T6R2 138 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 RNLSQ5VYX0 342 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 LINC00596Q86U02 117 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 LYPD6Q86Y78 171 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 UBALD1Q8TB05 177 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 NEK7Q8TDX7 302 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 MYDGFQ969H8 173 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 TMED9Q9BVK6 235 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 NCOR1P1Q9H4R4 102 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 BANF2Q9H503 90 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 SCN3BQ9NY72 215 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 IDI2-AS1Q9NZ38 188 aa13.09□□□□□ -0.31
LSM1-201ENST00000311351 TMEM30CPA0ZSE6 113 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 FAM90A22PA8MWA6 464 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 LEUTXA8MZ59 168 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 NPIPB11E5RHQ5 1161 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 BUB1B-PAK6H3BSN5 160 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 MYF6P23409 242 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 MAPK3P27361 379 aaPredicted RBP13.08□□□□□ -0.32
LSM1-201ENST00000311351 GNG10P50151 68 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 GP2P55259 537 aaKnown RBP13.08□□□□□ -0.32
LSM1-201ENST00000311351 IRF3Q14653 427 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 HERPUD1Q15011 391 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 SPHARQ15513 63 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 MED22Q15528 200 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 TMEM95Q3KNT9 176 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 ACSM3Q53FZ2 586 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 IZUMO2Q6UXV1 221 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 Q6ZS46 218 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 NKAIN3Q8N8D7 197 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 ZNF565Q8N9K5 539 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 TMEM104Q8NE00 496 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 OR9G1Q8NH87 305 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 ANKRD60Q9BZ19 345 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 LINC00574Q9H8X3 128 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 SERTAD4Q9NUC0 356 aa13.08□□□□□ -0.32
LSM1-201ENST00000311351 LY6LH3BQJ8 138 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 MGMTP16455 207 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 VHLP40337 213 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 PRRX1P54821 245 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 GPR176Q14439 515 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 Q6ZTK2 550 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 Q8N2B8 174 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 THRSPQ92748 146 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 MMP28Q9H239 520 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 MMP27Q9H306 513 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 PCDHB16Q9NRJ7 776 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 RCC2Q9P258 522 aaKnown RBP13.07□□□□□ -0.32
LSM1-201ENST00000311351 PSG11Q9UQ72 335 aa13.07□□□□□ -0.32
LSM1-201ENST00000311351 A0A1W2PPE3 182 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 J3QR06 171 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 CRTAPO75718 401 aaPredicted RBP13.06□□□□□ -0.32
LSM1-201ENST00000311351 CEACAM3P40198 252 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 BLCAPP62952 87 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 RBM48Q5RL73 367 aaKnown RBP13.06□□□□□ -0.32
LSM1-201ENST00000311351 LIPKQ5VXJ0 399 aa13.06□□□□□ -0.32
LSM1-201ENST00000311351 FAM53AQ6NSI3 398 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms