RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 SIRPB1O00241 398 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 WNT9BO14905 357 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 NMBP08949 121 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 ACAA1P09110 424 aaPredicted RBP5.54□□□□□ -1.52
USP47-201ENST00000305481 GLP1RP43220 463 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 ZNF83P51522 516 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 ABCA11PQ4W5N1 156 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 ESCO2Q56NI9 601 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 TIMM23BQ5SRD1 257 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 PXDC1Q5TGL8 231 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 GGNBP1Q5YKI7 109 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 FAM180AQ6UWF9 173 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 DOLPP1Q86YN1 238 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 CISD2Q8N5K1 135 aaKnown RBP5.54□□□□□ -1.52
USP47-201ENST00000305481 LHFPL5Q8TAF8 219 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 DCUN1D4Q92564 292 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 MSI2Q96DH6 328 aaKnown RBP5.54□□□□□ -1.52
USP47-201ENST00000305481 TP53RKQ96S44 253 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 GPHA2Q96T91 129 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 TLNRD1Q9H1K6 362 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 GSKIPQ9P0R6 139 aa5.54□□□□□ -1.52
USP47-201ENST00000305481 K7ENP7 123 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 BCL2L11O43521 198 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 TIMM8AO60220 97 aaPredicted RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 NXPH2O95156 264 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 TUBG1P23258 451 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 CEBPDP49716 269 aaPredicted RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 HERV-K104P61576 105 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 PRSS54Q6PEW0 395 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 ZNF497Q6ZNH5 498 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 ZNF818PQ6ZRF7 136 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 LYZL2Q7Z4W2 148 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 LRP11Q86VZ4 500 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 Q8IYB0 196 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 GAPTQ8N292 157 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 SCARB1Q8WTV0 552 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 ST8SIA2Q92186 375 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 C18orf12Q96KH6 178 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 RBM14Q96PK6 669 aaKnown RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 RIMS4Q9H426 269 aaPredicted RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 HEATR1Q9H583 2144 aaKnown RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 TUBG2Q9NRH3 451 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 PTPRQQ9UMZ3 2332 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 KIR2DS1A0A191URI9 304 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 MPPED1O15442 326 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 PSPNO60542 156 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 TFF1P04155 84 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 TK1P04183 234 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 RRASP10301 218 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 KIR2DS4P43632 304 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 POLR2GP62487 172 aaKnown RBP eCLIP5.53□□□□□ -1.52
USP47-201ENST00000305481 FAM27E3Q08E93 113 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 KIR2DS1Q14954 304 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 IAH1Q2TAA2 248 aaPredicted RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 ZNF718Q3SXZ3 478 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 PAN3Q58A45 887 aaKnown RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 PRAMEF6Q5VXH4 476 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 LIAT1Q6ZQX7 453 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 LRTM2Q8N967 370 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 INO80EQ8NBZ0 244 aaPredicted RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 OR1S1Q8NH92 325 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 SFXN3Q9BWM7 321 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 CXXC4Q9H2H0 198 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 KIF25Q9UIL4 384 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 TUBD1Q9UJT1 453 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 KCNIP3Q9Y2W7 256 aa5.53□□□□□ -1.52
USP47-201ENST00000305481 TLN1Q9Y490 2541 aaKnown RBP5.53□□□□□ -1.52
USP47-201ENST00000305481 A8MXE2 369 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 LUMP51884 338 aaPredicted RBP5.52□□□□□ -1.53
USP47-201ENST00000305481 EIF2S3LQ2VIR3 472 aaKnown RBP5.52□□□□□ -1.53
USP47-201ENST00000305481 RGS7BPQ6MZT1 257 aaPredicted RBP5.52□□□□□ -1.53
USP47-201ENST00000305481 WDR82Q6UXN9 313 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 UNQ6126/PRO20091Q6UXV3 157 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 COMMD7Q86VX2 200 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 KIRREL1Q96J84 757 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 CXorf58Q96LI9 332 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 USB1Q9BQ65 265 aaKnown RBP5.52□□□□□ -1.53
USP47-201ENST00000305481 CYTL1Q9NRR1 136 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 SPEF1Q9Y4P9 236 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 RELNP78509 3460 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 KALRNO60229 2985 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 IGF2RP11717 2491 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 A0A0G2JNJ9 132 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 KANTRA0A1W2PQU2 76 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 TUBAL3A6NHL2 446 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 M0R1B8 84 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 GCH1P30793 250 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 RAB14P61106 215 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 NKX6-1P78426 367 aaPredicted RBP5.52□□□□□ -1.53
USP47-201ENST00000305481 PRR30Q53SZ7 412 aaPredicted RBP5.52□□□□□ -1.53
USP47-201ENST00000305481 SPRNQ5BIV9 151 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 SPIN3Q5JUX0 258 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 SHEQ5VZ18 495 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 RELL2Q8NC24 303 aaPredicted RBP5.52□□□□□ -1.53
USP47-201ENST00000305481 OR4A4PQ8NGN8 299 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 SECTM1Q8WVN6 248 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 SYT3Q9BQG1 590 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 SUCNR1Q9BXA5 334 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 REG4Q9BYZ8 158 aa5.52□□□□□ -1.53
USP47-201ENST00000305481 CCL28Q9NRJ3 127 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms