RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 HSF4Q9ULV5 492 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 YBX2Q9Y2T7 364 aaKnown RBP11.26□□□□□ -0.61
COL3A1-201ENST00000304636 GCGP01275 180 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 ISG15P05161 165 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 PNLIPP16233 465 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 TRA2AQ13595 282 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL3A1-201ENST00000304636 LAMTOR1Q6IAA8 161 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 OR4A4PQ8NGN8 299 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 IL17BQ9UHF5 180 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 IGKV1-8A0A0C4DH67 115 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 CAMPP49913 170 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 LINC00596Q86U02 117 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 SFTPA1Q8IWL2 248 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 C11orf42Q8N5U0 333 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 MRGPRDQ8TDS7 321 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 LPAR5Q9H1C0 372 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 LHX9Q9NQ69 397 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 EML2O95834 649 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 TRGC2P03986 189 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 PAFAH1B2P68402 229 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 TMEM97Q5BJF2 176 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 ZBTB34Q8NCN2 500 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 DYRK2Q92630 601 aa11.26□□□□□ -0.61
COL3A1-201ENST00000304636 OOEPA6NGQ2 149 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 FCGR3AP08637 254 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 PRSS12P56730 875 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 OR4F17Q8NGA8 305 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 OR4S2Q8NH73 311 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 MRGPRFQ96AM1 343 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 SLC2A8Q9NY64 477 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 IGHV3-43A0A0B4J1X8 118 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 C2CD4DB7Z1M9 353 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 IGHV3-43DP0DP04 118 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 CCL2P13500 99 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 SRP14P37108 136 aaKnown RBP11.25□□□□□ -0.61
COL3A1-201ENST00000304636 CA5BP1Q8WTZ4 195 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 DMRT1Q9Y5R6 373 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 TRGV5A0A0B4J1U4 118 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 OR2M5A3KFT3 312 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 CXorf65A6NEN9 183 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 CD8AP01732 235 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 PMELP40967 661 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 P2RY4P51582 365 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 SMAD4Q13485 552 aaKnown RBP11.25□□□□□ -0.61
COL3A1-201ENST00000304636 TMEM92Q6UXU6 159 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 VASH2Q86V25 355 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 TM4SF19Q96DZ7 209 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 ADTRPQ96IZ2 230 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 HDHD3Q9BSH5 251 aaPredicted RBP11.25□□□□□ -0.61
COL3A1-201ENST00000304636 LRRC3CA6NJW4 275 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 UBE2L3P68036 154 aaKnown RBP11.25□□□□□ -0.61
COL3A1-201ENST00000304636 TBX15Q96SF7 602 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 SARGQ9BW04 601 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 BMPR1BO00238 502 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 RECKO95980 971 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 CXorf1O96002 111 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 IFI6P09912 130 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 WNT2BQ93097 391 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 RASL10BQ96S79 203 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 ZNF552Q9H707 407 aaPredicted RBP11.25□□□□□ -0.61
COL3A1-201ENST00000304636 DOCK5Q9H7D0 1870 aa11.25□□□□□ -0.61
COL3A1-201ENST00000304636 ALKBH6Q3KRA9 238 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 FNDC7Q5VTL7 733 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 OR10AD1Q8NGE0 317 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 OR2H1Q9GZK4 316 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 SPRY3O43610 288 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 CA11O75493 328 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 TNFRSF1AP19438 455 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 CDX1P47902 265 aaPredicted RBP11.24□□□□□ -0.61
COL3A1-201ENST00000304636 ZP1P60852 638 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 HIST3H3Q16695 136 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 Q1RN00 199 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 ACER2Q5QJU3 275 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 COL5A1-AS1Q5SY13 56 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 TMEM252Q8N6L7 170 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 ABHD14BQ96IU4 210 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 HSD17B10Q99714 261 aaKnown RBP11.24□□□□□ -0.61
COL3A1-201ENST00000304636 RPP25Q9BUL9 199 aaKnown RBP11.24□□□□□ -0.61
COL3A1-201ENST00000304636 PAM16Q9Y3D7 125 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 A0A0U1RQV5 110 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 A8MXK9 166 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 SNURFLB1AK76 121 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 CD74P04233 296 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 PSG2P11465 335 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 GNG10P50151 68 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 C9orf40Q8IXQ3 194 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 VN1R17PQ8TDU5 208 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 CXXC4Q9H2H0 198 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 K7EQS6 105 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 SEMA7AO75326 666 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 NGFRP08138 427 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 CD99P14209 185 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 PSG5Q15238 335 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 ZNF385CQ66K41 422 aaPredicted RBP11.24□□□□□ -0.61
COL3A1-201ENST00000304636 GUSBP11Q6P575 273 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 OR4P4Q8NGL7 312 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 TUBD1Q9UJT1 453 aa11.24□□□□□ -0.61
COL3A1-201ENST00000304636 PTPRFP10586 1907 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 A0A1W2PN81 502 aa11.23□□□□□ -0.61
COL3A1-201ENST00000304636 SRSF10O75494 262 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms