RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 HTR3BO95264 441 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 IGKV1D-33P01593 117 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 IGKV1-33P01594 117 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 CD2P06729 351 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 RAB40BQ12829 278 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 DIAPH2-AS1Q14236 149 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 HNF4GQ14541 408 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 RSBN1Q5VWQ0 802 aaPredicted RBP10.12□□□□□ -0.79
CD44-203ENST00000278386 ELP2Q6IA86 826 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 ZFP1Q6P2D0 407 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 THNSL2Q86YJ6 484 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 OR8H3Q8N146 312 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 C5orf56Q8N8D9 126 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 LINC00482Q8N8I6 264 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 KLHL30-AS1Q8NEE0 82 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 HAVCR2Q8TDQ0 301 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 CHPT1Q8WUD6 406 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 JAM3Q9BX67 310 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 FAM118AQ9NWS6 357 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 LINC00527Q9UJ94 153 aa10.12□□□□□ -0.79
CD44-203ENST00000278386 TRAV39A0A0B4J263 110 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 A0A1W2PPE3 182 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 H3BNX3 289 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 HSD17B6O14756 317 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 FGF16O43320 207 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 OR7C1O76099 320 aaPredicted RBP10.11□□□□□ -0.79
CD44-203ENST00000278386 CGB3P0DN86 165 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 CGB7P0DN87 165 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 GABRB1P18505 474 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 KCNJ3P48549 501 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 GTF2A1P52655 376 aaPredicted RBP10.11□□□□□ -0.79
CD44-203ENST00000278386 KRTAP10-11P60412 298 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 RPL23AP62750 156 aaKnown RBP10.11□□□□□ -0.79
CD44-203ENST00000278386 PPP3R1P63098 170 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 SLC35B1P78383 322 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 VAX1Q5SQQ9 334 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 DDI2Q5TDH0 399 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 ETV3LQ6ZN32 361 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 C8orf86Q6ZUL3 223 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 OR2W3Q7Z3T1 314 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 SLC35E3Q7Z769 313 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 MRPL41Q8IXM3 137 aaKnown RBP10.11□□□□□ -0.79
CD44-203ENST00000278386 SUMF2Q8NBJ7 301 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 OR52I1Q8NGK6 324 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 NEK7Q8TDX7 302 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 S100A13Q99584 98 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 C9orf16Q9BUW7 83 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 DPCDQ9BVM2 203 aaPredicted RBP10.11□□□□□ -0.79
CD44-203ENST00000278386 NCOR1P1Q9H4R4 102 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 ST3GAL6Q9Y274 331 aa10.11□□□□□ -0.79
CD44-203ENST00000278386 FAM90A18PA6NE21 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A16PA6NEW6 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A20PA6NIJ5 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A9PA6NNJ1 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A12PA8MX19 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A5PA8MXJ8 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 NPIPB11E5RHQ5 1161 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 CCRL2O00421 344 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 CDRT1O95170 752 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 CSTBP04080 98 aaKnown RBP10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A15PP0C7V4 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A13PP0C7W8 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A14PP0C7W9 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FAM90A24PP0C7X0 464 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 SERPINA2P20848 420 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 REG1BP48304 166 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 C11orf87Q6NUJ2 197 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 C18orf65Q6ZTR6 163 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 MOB3BQ86TA1 216 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 FOXRED2Q8IWF2 684 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 OR10A7Q8NGE5 316 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 GPR148Q8TDV2 347 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 RGP1Q92546 391 aaPredicted RBP10.1□□□□□ -0.79
CD44-203ENST00000278386 TMEM106AQ96A25 262 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 METTL9Q9H1A3 318 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 ZNF581Q9P0T4 197 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 ING4Q9UNL4 249 aa10.1□□□□□ -0.79
CD44-203ENST00000278386 RPL36Q9Y3U8 105 aaKnown RBP10.1□□□□□ -0.79
CD44-203ENST00000278386 IGHV3-72A0A0B4J1Y9 119 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 LOC100130705A0A1B0GUX0 176 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 TMEM30CPA0ZSE6 113 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 NCBP2LA6PVI3 153 aaKnown RBP10.09□□□□□ -0.79
CD44-203ENST00000278386 SDCBPO00560 298 aaPredicted RBP10.09□□□□□ -0.79
CD44-203ENST00000278386 THBS3P49746 956 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 RBM11P57052 281 aaKnown RBP10.09□□□□□ -0.79
CD44-203ENST00000278386 RAB25P57735 213 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 PAX5Q02548 391 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 CD69Q07108 199 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 KLHL22Q53GT1 634 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 ATAD3CQ5T2N8 411 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 RHOXF1Q8NHV9 184 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 UBALD1Q8TB05 177 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 MCRIP2Q9BUT9 160 aaKnown RBP10.09□□□□□ -0.79
CD44-203ENST00000278386 LINC00574Q9H8X3 128 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.09□□□□□ -0.79
CD44-203ENST00000278386 DNAH9Q9NYC9 4486 aa10.09□□□□□ -0.79
CD44-203ENST00000278386 IGHV3-43A0A0B4J1X8 118 aa10.08□□□□□ -0.8
CD44-203ENST00000278386 IGHV1-3A0A0C4DH29 117 aa10.08□□□□□ -0.8
CD44-203ENST00000278386 GEMIN2O14893 280 aaKnown RBP10.08□□□□□ -0.8
CD44-203ENST00000278386 IGHG2P01859 326 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms