RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 M0QXV9 152 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ZNF593O00488 134 aaPredicted RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TP53I11O14683 189 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 AKR7A2O43488 359 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 COX7A2P2O60397 106 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GMDSO60547 372 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ALOX12BO75342 701 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 WBP4O75554 376 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 POP7O75817 140 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TRAPPC6AO75865 159 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 KRT34O76011 436 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 C1QCP02747 245 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 RLN2P04090 185 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 IGKV5-2P06315 115 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 KRTAP2-3P0C7H8 128 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GOLGA8HP0CJ92 632 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 IGHV3-30-3P0DP02 117 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GZMBP10144 247 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 LIPCP11150 499 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TAC1P20366 129 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PMCHP20382 165 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CD9P21926 228 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 IVDP26440 423 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CRABP2P29373 138 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PEBP1P30086 187 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CCT6AP40227 531 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 MAGEA3P43357 314 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GCLMP48507 274 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 NUDT2P50583 147 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 EMP2P54851 167 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 DAOAP59103 153 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 C1QTNF8P60827 252 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 LCN2P80188 198 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ZNF117Q03924 483 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SPAG1Q07617 926 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 APOFQ13790 326 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GPR176Q14439 515 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PDGFRLQ15198 375 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TNXAQ16473 311 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TAL2Q16559 108 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 NDUFAF6Q330K2 333 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ZNF791Q3KP31 576 aaPredicted RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ATP6AP1LQ52LC2 224 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 UBE2NLQ5JXB2 153 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 IDNKQ5T6J7 187 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SYT6Q5T7P8 510 aaPredicted RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 NIPAL1Q6NVV3 410 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ULK3Q6PHR2 472 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CLEC2AQ6UVW9 174 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ANGPTL8Q6UXH0 198 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 UNQ6190/PRO20217Q6UXQ8 127 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SDIM1Q6ZPB5 146 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CLEC20AQ6ZU45 233 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 C2orf91Q6ZV80 131 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SLC35D2Q76EJ3 337 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SSX7Q7RTT5 188 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 MRPL21Q7Z2W9 205 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 OR2W3Q7Z3T1 314 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 VN1R4Q7Z5H5 301 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 LUZP2Q86TE4 346 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 COA5Q86WW8 74 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 RBM45Q8IUH3 476 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 NELFCDQ8IXH7 590 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 KATNAL2Q8IYT4 538 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CA13Q8N1Q1 262 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 MUC15Q8N387 334 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TCAIMQ8N3R3 496 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 C2orf73Q8N5S3 287 aaPredicted RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 COMMD1Q8N668 190 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 FER1L6-AS1Q8NA97 138 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 C15orf53Q8NAA6 179 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 OR51A7Q8NH64 312 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 FAM81AQ8TBF8 368 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GPX8Q8TED1 209 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CA5BP1Q8WTZ4 195 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PIH1D2Q8WWB5 315 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ING5Q8WYH8 240 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 CLDN23Q96B33 292 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 ADTRPQ96IZ2 230 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SLC35G5Q96KT7 338 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 OLFM3Q96PB7 478 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 GSDMAQ96QA5 445 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 METTL26Q96S19 204 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 LINC01587Q99440 93 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PLIN2Q99541 437 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 TSNAXQ99598 290 aaKnown RBP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 PRSS27Q9BQR3 290 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 KRTAP2-4Q9BYR9 128 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 KRTAP2-1Q9BYU5 128 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 FAM192AQ9GZU8 254 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SLC38A1Q9H2H9 487 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 SMDT1Q9H4I9 107 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 XKR8Q9H6D3 395 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 LRRC19Q9H756 370 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 EXO5Q9H790 373 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 C12orf4Q9NQ89 552 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 RBM22Q9NW64 420 aaKnown RBP eCLIP-0.03□□□□□ -2.41
VPS35-212ENST00000640313 RAB20Q9NX57 234 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 BTRCQ9Y297 605 aa-0.03□□□□□ -2.41
VPS35-212ENST00000640313 AP3M1Q9Y2T2 418 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms