RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RTN4IP1Q8WWV3 396 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 SPSB2Q99619 263 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 MYLKQ15746 1914 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 TCAPO15273 167 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 SS18L1O75177 396 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 LSM6P62312 80 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 RPL24P83731 157 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 OR2F1Q13607 317 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 PSMG4Q5JS54 123 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF705AQ6ZN79 300 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 Q6ZS92 163 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 OR10A7Q8NGE5 316 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 RFESDQ8TAC1 157 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 ITLN1Q8WWA0 313 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 CNTD2Q9H8S5 307 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 RHOFQ9HBH0 211 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 PRR14LQ5THK1 2151 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 SPTBN4Q9H254 2564 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 LANCL1O43813 399 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 DUSP1P28562 367 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 TIMP3P35625 211 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 CDX1P47902 265 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 SPCS3P61009 180 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 FOXL1Q12952 345 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 CDK5R2Q13319 367 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 ADPRHL1Q8NDY3 354 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 OR8U1Q8NH10 309 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 OR52N1Q8NH53 320 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 MBD3L1Q8WWY6 194 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF486Q96H40 463 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 MGLLQ99685 303 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 HSD17B10Q99714 261 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 PDCD1LG2Q9BQ51 273 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 BABAM2Q9NXR7 383 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 CD300AQ9UGN4 299 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 LSM5Q9Y4Y9 91 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 H0Y8G0 127 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 OPRK1P41145 380 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 MRPS11P82912 194 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 AESQ08117 197 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 HNRNPA0Q13151 305 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 TUSC1Q2TAM9 212 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 C1QTNF12Q5T7M4 302 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 WDR73Q6P4I2 378 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 CBLL1Q75N03 491 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 RHOUQ7L0Q8 258 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 WDFY1Q8IWB7 410 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 PRSS35Q8N3Z0 413 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 PFN4Q8NHR9 129 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 DUS3LQ96G46 650 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 C10orf90Q96M02 699 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 VSTM2LQ96N03 204 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM70Q9BUB7 260 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 MCRIP2Q9BUT9 160 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 ABCG5Q9H222 651 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 CLEC5AQ9NY25 188 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 MRPL15Q9P015 296 aaKnown RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 IGHV3OR16-12A0A075B7B8 117 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 OR5AL1P0C617 328 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 SMIM6P0DI80 62 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 EPHA2P29317 976 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 TGFBR1P36897 503 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 CMC4P56277 68 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 RNF151Q2KHN1 245 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 IAH1Q2TAA2 248 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 PLA2G2CQ5R387 149 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM236Q5W0B7 351 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 OR2L13Q8N349 312 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 STPG3Q8N7X2 389 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 DUX5Q96PT3 197 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 TPPP3Q9BW30 176 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 TINAGL1Q9GZM7 467 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-218ENST00000640036 SLC7A10Q9NS82 523 aa4.4□□□□□ -1.71
SCN1A-218ENST00000640036 SPDEFO95238 335 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 MC5RP33032 325 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 BAXQ07812 192 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 FDX2Q6P4F2 183 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 DNM1P46Q6ZS02 220 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM217Q8N7C4 229 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 OR6M1Q8NGM8 313 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 RAB37Q96AX2 223 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SEH1LQ96EE3 360 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 EBF2Q9HAK2 575 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SIRT7Q9NRC8 400 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF230Q9UIE0 474 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 STRAPQ9Y3F4 350 aaKnown RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SRMP19623 302 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CLDN20P56880 219 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CD81P60033 236 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 MESP2Q0VG99 397 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 C11orf44Q8N8P7 122 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 BPIFCQ8NFQ6 507 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 MAGT1Q9H0U3 335 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 MED20Q9H944 212 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 HSPB8Q9UJY1 196 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 RLFQ13129 1914 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ELOA3CA0A087WX78 387 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 POM121CA8CG34 1229 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 PTP4A3O75365 173 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 TFAP2AP05549 437 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms