RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HEPN1Q6WQI6 88 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 TCF23Q7RTU1 214 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 OR2W3Q7Z3T1 314 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 KCNG3Q8TAE7 436 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 Q96M66 194 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 VCX3AQ9NNX9 186 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 SIRT7Q9NRC8 400 aa14.95□□□□□ -0.02
CLN3-259ENST00000637551 ZNF729A6NN14 1252 aaPredicted RBP14.94□□□□□ -0.02
CLN3-259ENST00000637551 HAX1O00165 279 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 PDCD5O14737 125 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 NPFFO15130 113 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 CLPXO76031 633 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 OR7C1O76099 320 aaPredicted RBP14.94□□□□□ -0.02
CLN3-259ENST00000637551 IGHV1-8P0DP01 117 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 MGMTP16455 207 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 HTR2CP28335 458 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 EDDM3AQ14507 147 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 FAM189A2Q15884 450 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 PIGYQ3MUY2 71 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 KRBOX4Q5JUW0 171 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 SLC35E4Q6ICL7 350 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 Q6YL49 198 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 SIGLECL1Q8N7X8 197 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 ZNF565Q8N9K5 539 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 OR11H6Q8NGC7 330 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 OR4M1Q8NGD0 313 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 OR10A7Q8NGE5 316 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 OR13D1Q8NGV5 346 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 OR10K1Q8NGX5 313 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 SSMEM1Q8WWF3 244 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 CHST6Q9GZX3 395 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 PPIL3Q9H2H8 161 aaKnown RBP14.94□□□□□ -0.02
CLN3-259ENST00000637551 PPA2Q9H2U2 334 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 ZNF696Q9H7X3 374 aa14.94□□□□□ -0.02
CLN3-259ENST00000637551 TBL2Q9Y4P3 447 aaKnown RBP14.94□□□□□ -0.02
CLN3-259ENST00000637551 A0A087WXM4 84 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 GEMIN2O14893 280 aaKnown RBP14.93□□□□□ -0.02
CLN3-259ENST00000637551 VENTXO95231 258 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 RNASE1P07998 156 aaKnown RBP14.93□□□□□ -0.02
CLN3-259ENST00000637551 CALRP27797 417 aaKnown RBP14.93□□□□□ -0.02
CLN3-259ENST00000637551 CD34P28906 385 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 SNU13P55769 128 aaKnown RBP14.93□□□□□ -0.02
CLN3-259ENST00000637551 TMEM30BQ3MIR4 351 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 BRD3OSQ6XYD6 125 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 ZNF554Q86TJ5 538 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 RTN4RL2Q86UN3 420 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 GAPTQ8N292 157 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 ZDHHC22Q8N966 263 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 SLC25A28Q96A46 364 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 COQ2Q96H96 371 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 ZNF48Q96MX3 618 aaPredicted RBP14.93□□□□□ -0.02
CLN3-259ENST00000637551 DPCDQ9BVM2 203 aaPredicted RBP14.93□□□□□ -0.02
CLN3-259ENST00000637551 RAB9BQ9NP90 201 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 STUB1Q9UNE7 303 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 SESN1Q9Y6P5 492 aa14.93□□□□□ -0.02
CLN3-259ENST00000637551 A0A087X0M5 115 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 A0A1B0GX30 115 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 POM121CA8CG34 1229 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 TMEM127O75204 238 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 CCL3L1P16619 93 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 MYL9P24844 172 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 PSMB9P28065 219 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 UBA52P62987 128 aaKnown RBP14.92□□□□□ -0.02
CLN3-259ENST00000637551 RSBN1Q5VWQ0 802 aaPredicted RBP14.92□□□□□ -0.02
CLN3-259ENST00000637551 HCP5Q6MZN7 132 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 SLC16A12Q6ZSM3 486 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 BCL6BQ8N143 479 aaPredicted RBP14.92□□□□□ -0.02
CLN3-259ENST00000637551 PIP4P2Q8N4L2 257 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 SUMF2Q8NBJ7 301 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 NR1H4Q96RI1 486 aaPredicted RBP14.92□□□□□ -0.02
CLN3-259ENST00000637551 TM2D1Q9BX74 207 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 DPAGT1Q9H3H5 408 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 FAM96BQ9Y3D0 163 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 V9GY05 133 aa14.92□□□□□ -0.02
CLN3-259ENST00000637551 DNAJC9-AS1A6NH13 148 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 TRIM64CA6NLI5 447 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 TMEM14DPA8MWL7 114 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 ODF3BA8MYP8 253 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 CRTAPO75718 401 aaPredicted RBP14.91□□□□□ -0.02
CLN3-259ENST00000637551 CGB3P0DN86 165 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 CGB7P0DN87 165 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 GZMHP20718 246 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 FUT3P21217 361 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 SAA4P35542 130 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 SCN1BQ07699 218 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 AESQ08117 197 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 BAMBIQ13145 260 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 DEFB112Q30KQ8 113 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 KRTAP24-1Q3LI83 254 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 TIMM50Q3ZCQ8 353 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 MINOS1Q5TGZ0 78 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 ZNF626Q68DY1 528 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 TRAT1Q6PIZ9 186 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 GDPGP1Q6ZNW5 385 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 TRAPPC6BQ86SZ2 158 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 TPRA1Q86W33 373 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 BEND2Q8NDZ0 799 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 OR5R1Q8NH85 324 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 C22orf15Q8WYQ4 148 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 ZDHHC16Q969W1 377 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms