RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 OR3A3P47888 321 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 RAG2P55895 527 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 TEX36Q5VZQ5 186 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 ZNF497Q6ZNH5 498 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 C17orf107Q6ZR85 190 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 OVCH2Q7RTZ1 564 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 ARRDC1Q8N5I2 433 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 ANGPTL6Q8NI99 470 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 PRRT1Q99946 306 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 SPOCK3Q9BQ16 436 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 C20orf85Q9H1P6 137 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 DCAF16Q9NXF7 216 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 METRNQ9UJH8 293 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 SCP2D1Q9UJQ7 156 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 DYSFO75923 2080 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 TRAV6A0A075B6T7 132 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 A0A0B4J293 547 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 TMEM82A0PJX8 343 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 FUOMA2VDF0 154 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 H7C1Q1 480 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 HPXP02790 462 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 IFNA6P05013 189 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 SOD3P08294 240 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 H2AFB2P0C5Z0 115 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 MUC1P15941 1255 aaPredicted RBP15.43■□□□□ 0.06
CLN3-254ENST00000637050 KCNJ3P48549 501 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 CDK10Q15131 360 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 ZNF880Q6PDB4 577 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 C20orf204Q6ZNR8 217 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 IDO2Q6ZQW0 420 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 C1orf87Q8N0U7 546 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 VRK1Q99986 396 aaPredicted RBP15.43■□□□□ 0.06
CLN3-254ENST00000637050 TMEM106BQ9NUM4 274 aa15.43■□□□□ 0.06
CLN3-254ENST00000637050 RALYQ9UKM9 306 aaKnown RBP15.43■□□□□ 0.06
CLN3-254ENST00000637050 TMEM178BH3BS89 294 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 ZNF737O75373 536 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 OR3A1P47881 315 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 BCAP31P51572 246 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 STUMQ69YW2 141 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 CADM3Q8N126 398 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 GINS4Q9BRT9 223 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 TRAF4Q9BUZ4 470 aaPredicted RBP15.42■□□□□ 0.06
CLN3-254ENST00000637050 SHARPINQ9H0F6 387 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 FLVCR2Q9UPI3 526 aa15.42■□□□□ 0.06
CLN3-254ENST00000637050 IGHV1-69-2A0A0G2JMI3 117 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 OOEPA6NGQ2 149 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 ARPC4P59998 168 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 ATXN7L3Q14CW9 347 aaPredicted RBP15.41■□□□□ 0.06
CLN3-254ENST00000637050 GRK1Q15835 563 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 SCGB2B2Q4G0G5 96 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 OR13C8Q8NGS7 320 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 CCL17Q92583 94 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 SLC25A21Q9BQT8 299 aaPredicted RBP15.41■□□□□ 0.06
CLN3-254ENST00000637050 EHFQ9NZC4 300 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 TANC2Q9HCD6 1990 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 SDCBPO00560 298 aaPredicted RBP15.41■□□□□ 0.06
CLN3-254ENST00000637050 ZNF205O95201 554 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 GABRA2P47869 451 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 RAB25P57735 213 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 PAX5Q02548 391 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 TATDN3Q17R31 274 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 SLC35E4Q6ICL7 350 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 ASCC1Q8N9N2 400 aaKnown RBP15.41■□□□□ 0.06
CLN3-254ENST00000637050 MRGPRFQ96AM1 343 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 SDSLQ96GA7 329 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 NECAP2Q9NVZ3 263 aa15.41■□□□□ 0.06
CLN3-254ENST00000637050 PKDREJQ9NTG1 2253 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 KIR2DS1A0A191URI9 304 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 LGALS8O00214 317 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 ARPC1BO15143 372 aaKnown RBP15.4■□□□□ 0.06
CLN3-254ENST00000637050 DHFRP00374 187 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 GSTT2P0CG29 244 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 KIR2DS4P43632 304 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 MECP2P51608 486 aaKnown RBP15.4■□□□□ 0.06
CLN3-254ENST00000637050 TSPAN5P62079 268 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 KIR2DS1Q14954 304 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 DOPEY1Q5JWR5 2465 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 MOB1BQ7L9L4 216 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 TMEM17Q86X19 198 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 TERB2Q8NHR7 220 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 COQ2Q96H96 371 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 SNX22Q96L94 193 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 RAB1BQ9H0U4 201 aa15.4■□□□□ 0.06
CLN3-254ENST00000637050 RAI1Q7Z5J4 1906 aaPredicted RBP15.4■□□□□ 0.06
CLN3-254ENST00000637050 PPIAL4EA0A075B759 164 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 TRAV38-1A0A0B4J264 116 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 TMEM30CPA0ZSE6 113 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 TRDCB7Z8K6 153 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 PPIAL4DF5H284 164 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 PEX14O75381 377 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 PPIAL4FP0DN26 164 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 OR5H8P0DN80 308 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 RCC1P18754 421 aaPredicted RBP15.39■□□□□ 0.05
CLN3-254ENST00000637050 LHFPL1Q86WI0 220 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 ZNF561Q8N587 486 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 DEFB108BQ8NET1 73 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 PPP1R35Q8TAP8 253 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 UBTD1Q9HAC8 227 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 MBNL3Q9NUK0 354 aaKnown RBP15.39■□□□□ 0.05
CLN3-254ENST00000637050 ING3Q9NXR8 418 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms