RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 RCL1Q9Y2P8 373 aaKnown RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 STARD10Q9Y365 291 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 BRWD1Q9NSI6 2320 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 RNF212BA8MTL3 300 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 AP4M1O00189 453 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 PITX3O75364 302 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 PRB1P04280 392 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FABP1P07148 127 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FCGR3AP08637 254 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OR5AC1P0C628 307 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SNRPEP62304 92 aaKnown RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SUPT4H1P63272 117 aaKnown RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 NKX6-1P78426 367 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 CLN3Q13286 438 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OR8G1Q15617 311 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 PHLDA2Q53GA4 152 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FAM27BQ5VT28 67 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 AADACL3Q5VUY0 350 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 CDCP2Q5VXM1 449 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 DHRS11Q6UWP2 260 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 AAED1Q7RTV5 226 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OR2C3Q8N628 320 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OR5L1Q8NGL2 311 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 MR1Q95460 341 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 CPNE4Q96A23 557 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 NEU1Q99519 415 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 PLK3Q9H4B4 646 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 NIT2Q9NQR4 276 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 IL36GQ9NZH8 169 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 CACFD1Q9UGQ2 172 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 AK3Q9UIJ7 227 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 URB1O60287 2271 aaKnown RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 B4DEV8 164 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SHISA8B8ZZ34 492 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 C21orf140B9A014 251 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 J3QW42 95 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 CIDEAO60543 219 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 OPN1LWP04000 364 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 ADCYAP1P18509 176 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 RCC1P18754 421 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 CD81P60033 236 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM187Q14656 261 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 TAF9Q16594 264 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM182Q6ZP80 229 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 MKXQ8IYA7 352 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FADS6Q8N9I5 356 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 ST6GALNAC3Q8NDV1 305 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 ROBO4Q8WZ75 1007 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 HIST1H2BAQ96A08 127 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 MOB3AQ96BX8 217 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 UCN2Q96RP3 112 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 RASL10BQ96S79 203 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 ADAT1Q9BUB4 502 aaKnown RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SLC2A9Q9NRM0 540 aa3.46□□□□□ -1.86
SCN1A-214ENST00000637038 FOXD3Q9UJU5 478 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 PUS1Q9Y606 427 aaKnown RBP eCLIP3.46□□□□□ -1.86
SCN1A-214ENST00000637038 SIGLEC5O15389 551 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 TXNL1O43396 289 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 OR7C1O76099 320 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-214ENST00000637038 SERPINE2P07093 398 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 FOLR3P41439 243 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 RPS10P46783 165 aaKnown RBP3.45□□□□□ -1.86
SCN1A-214ENST00000637038 CEBPGP53567 150 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 HBG1P69891 147 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 HBG2P69892 147 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 KIAA0141Q14154 515 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-214ENST00000637038 HIST3H3Q16695 136 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF674Q2M3X9 581 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 MST1LQ2TV78 715 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 PRAMEF20Q5VT98 475 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 FAM180AQ6UWF9 173 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 FOXL2NBQ6ZUU3 175 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF100Q8IYN0 542 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 OR8U1Q8NH10 309 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 NANPQ8TBE9 248 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 M1APQ8TC57 530 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 RNF138Q8WVD3 245 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 ABHD17AQ96GS6 310 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 MARS2Q96GW9 593 aaKnown RBP3.45□□□□□ -1.86
SCN1A-214ENST00000637038 CYYR1Q96J86 154 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 C1orf147Q96MC9 270 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-214ENST00000637038 CLCC1Q96S66 551 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 KIAA1456Q9P272 454 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 B4GALT7Q9UBV7 327 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 ST3GAL6Q9Y274 331 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 FBXO7Q9Y3I1 522 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF462Q96JM2 2506 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 C3orf85A0A1B0GTC6 90 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1W2PP11 408 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 OR5H15A6NDH6 313 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 CXorf65A6NEN9 183 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 COLCA2A8K830 154 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 C17orf51A8MQB3 221 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 TRDCB7Z8K6 153 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 TRAPPC2LH3BP13 241 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 SCAF4O95104 1147 aaKnown RBP3.45□□□□□ -1.86
SCN1A-214ENST00000637038 SYNGR4O95473 234 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 ANOS1P23352 680 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 NFYBP25208 207 aa3.45□□□□□ -1.86
SCN1A-214ENST00000637038 OPRM1P35372 400 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms