RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 VBP1P61758 197 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 NCS1P62166 190 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 AESQ08117 197 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 FAM189A2Q15884 450 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 CHRFAM7AQ494W8 412 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 KRBOX4Q5JUW0 171 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 TMEM200BQ69YZ2 307 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 RAB12Q6IQ22 244 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 SLC16A12Q6ZSM3 486 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 BPIFB2Q8N4F0 458 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 WDFY2Q96P53 400 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 NEDD4LQ96PU5 975 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 NAA50Q9GZZ1 169 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 ING3Q9NXR8 418 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 ZNF581Q9P0T4 197 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 RCC2Q9P258 522 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 OPN4Q9UHM6 478 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 PEX16Q9Y5Y5 336 aa15.75■□□□□ 0.11
SQSTM1-216ENST00000626660 TMEM272A0A1B0GTI8 110 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 hCG_1809904A0A1W2PP81 198 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 A0A1W2PPE2 198 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 A0A1W2PR64 198 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 A0A1W2PRV1 198 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 M0R1W7 72 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 PDCD6O75340 191 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 TOX4O94842 621 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 GLAP06280 429 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 IDNKQ5T6J7 187 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 IL17RELQ6ZVW7 336 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 TRAPPC6BQ86SZ2 158 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 CLVS1Q8IUQ0 354 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 TPRX1Q8N7U7 411 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 NANPQ8TBE9 248 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 PCGF1Q9BSM1 259 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 LPAR5Q9H1C0 372 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 LINC00312Q9Y6C7 94 aa15.74■□□□□ 0.11
SQSTM1-216ENST00000626660 TRGV10A0A0A0MS01 117 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 A0A0B4J203 849 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 LDLRAD4O15165 306 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 NOL3O60936 208 aaKnown RBP15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 TMEM127O75204 238 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 AVPP01185 164 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 RAB6AP20340 208 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 RPS19P39019 145 aaKnown RBP15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 GLIPR1P48060 266 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 NKAPLQ5M9Q1 402 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 METAP1DQ6UB28 335 aaPredicted RBP15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 C1orf122Q6ZSJ8 110 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 OR56B1Q8NGI3 324 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 UPRTQ96BW1 309 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 COQ2Q96H96 371 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 NICN1Q9BSH3 213 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 SIRPDQ9H106 197 aa15.73■□□□□ 0.11
SQSTM1-216ENST00000626660 ODAMA1E959 279 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 METTL21EPA6NDL7 271 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 CRLF1O75462 422 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 BLVRBP30043 206 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 PAX5Q02548 391 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 ZNF273Q14593 569 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 CTF1Q16619 201 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 SIGIRRQ6IA17 410 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 BRICD5Q6PL45 260 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 C1orf229Q6ZS94 237 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 USP43Q70EL4 1123 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 PLPPR1Q8TBJ4 325 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 RAB2BQ8WUD1 216 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 PTX4Q96A99 478 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 ZNF714Q96N38 554 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 NCOR1P1Q9H4R4 102 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 METTL8Q9H825 291 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 ETAA1Q9NY74 926 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 OR6C3Q9NZP0 311 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 KIF25Q9UIL4 384 aa15.72■□□□□ 0.11
SQSTM1-216ENST00000626660 MEIKINA0A087WXM9 373 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 TMEM30CPA0ZSE6 113 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 ZNF728P0DKX0 622 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 SNRPBP14678 240 aaKnown RBP15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 MMP9P14780 707 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 SRD5A1P18405 259 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 CHATP28329 748 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 VEGFCP49767 419 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 SCAND1P57086 179 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 SCGB2A2Q13296 93 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 RSBN1Q5VWQ0 802 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 SLC35E4Q6ICL7 350 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 VMO1Q7Z5L0 202 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 FAM89BQ8N5H3 189 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 LGALS14Q8TCE9 139 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 SLC25A46Q96AG3 418 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 TBX15Q96SF7 602 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 BCL7BQ9BQE9 202 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 GAL3ST2Q9H3Q3 398 aa15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 UBE2J1Q9Y385 318 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-216ENST00000626660 A0A0A6YYD4 124 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 MEX3AA1L020 520 aaKnown RBP15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 UBE2QL1A1L167 161 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 CA11O75493 328 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 CCL3L1P16619 93 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 TMBIM6P55061 237 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 GPR157Q5UAW9 335 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms