RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MMDQ15546 238 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 ATP6V1FQ16864 119 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 ACTBL2Q562R1 376 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 DUPD1Q68J44 220 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 ELP2Q6IA86 826 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 TPGS1Q6ZTW0 290 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 CCDC121Q6ZUS5 278 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 MRPL21Q7Z2W9 205 aaKnown RBP0.4□□□□□ -2.35
SCN1A-208ENST00000625916 OR52K1Q8NGK4 314 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 TCP10LQ8TDR4 215 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 CASTOR1Q8WTX7 329 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 PDCD6IPQ8WUM4 868 aaKnown RBP0.4□□□□□ -2.35
SCN1A-208ENST00000625916 FMC1Q96HJ9 113 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 LINC01587Q99440 93 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 SPZ1Q9BXG8 430 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 IQCGQ9H095 443 aaKnown RBP0.4□□□□□ -2.35
SCN1A-208ENST00000625916 SLC25A31Q9H0C2 315 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 POMKQ9H5K3 350 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 LZTFL1Q9NQ48 299 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 PEF1Q9UBV8 284 aaKnown RBP0.4□□□□□ -2.35
SCN1A-208ENST00000625916 BTRCQ9Y297 605 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 MINOS1-NBL1R4GNA1 71 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 OTOFQ9HC10 1997 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 RTEL1-TNFRSF6BF6WH68 1400 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 FBN2P35556 2912 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 MIA3Q5JRA6 1907 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 IGLV3-9A0A075B6K5 115 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 VPS37CA5D8V6 355 aaPredicted RBP0.39□□□□□ -2.35
SCN1A-208ENST00000625916 PGPA6NDG6 321 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 SEC14L6B5MCN3 397 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 H3BP45 60 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 M0QXV9 152 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 MYO1DO94832 1006 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 SOX14O95416 240 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 M6PRP20645 277 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 IVDP26440 423 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 EVI2BP34910 448 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 G6PCP35575 357 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 P2RY2P41231 377 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 CSKP41240 450 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 MAGEA12P43365 314 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 GPR4P46093 362 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 OR2B6P58173 313 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 PSMC5P62195 406 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 C2orf80Q0P641 193 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 LRRC74AQ0VAA2 488 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 TSPAN31Q12999 210 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 HTR4Q13639 388 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 RAB11BQ15907 218 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 C16orf87Q6PH81 154 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 CA13Q8N1Q1 262 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 PROKR2Q8NFJ6 384 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 ERMNQ8TAM6 284 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 GPX8Q8TED1 209 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 C10orf105Q8TEF2 133 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 GLYATL2Q8WU03 294 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 KCTD4Q8WVF5 259 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 TFGQ92734 400 aaPredicted RBP0.39□□□□□ -2.35
SCN1A-208ENST00000625916 CERS2Q96G23 380 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 REEP6Q96HR9 211 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 GPR22Q99680 433 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 IL22Q9GZX6 179 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 C8orf33Q9H7E9 229 aaPredicted RBP0.39□□□□□ -2.35
SCN1A-208ENST00000625916 DNAJC27Q9NZQ0 273 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 DOK5Q9P104 306 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 HEY1Q9Y5J3 304 aa0.39□□□□□ -2.35
SCN1A-208ENST00000625916 WDR19Q8NEZ3 1342 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 USP42Q9H9J4 1324 aaKnown RBP0.38□□□□□ -2.35
SCN1A-208ENST00000625916 ATRNO75882 1429 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 TRPM3Q9HCF6 1732 aaPredicted RBP0.38□□□□□ -2.35
SCN1A-208ENST00000625916 KMT2DO14686 5537 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 TMEM131Q92545 1883 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 TRAV8-3A0A0A6YYJ7 113 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 SERTM2A0A1B0GWG4 89 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 ANKRD20A5PA0PJZ0 165 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 ARRDC5A6NEK1 342 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 RBFOX3A6NFN3 312 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 ZNF593O00488 134 aaPredicted RBP0.38□□□□□ -2.35
SCN1A-208ENST00000625916 TOR1AO14656 332 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 SPOPO43791 374 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 ALOX12BO75342 701 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 CRYGDP07320 174 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 OR4A8P0C604 315 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 SPAM1P38567 509 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 HINT1P49773 126 aaPredicted RBP0.38□□□□□ -2.35
SCN1A-208ENST00000625916 RWDD2BP57060 319 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 ZNF117Q03924 483 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 OR8G1Q15617 311 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 CEACAM16Q2WEN9 425 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 C10orf107Q8IVU9 208 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 KRTCAP2Q8N6L1 136 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 OR51Q1Q8NH59 317 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 SPPL2BQ8TCT7 592 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 CCL17Q92583 94 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 TMBIM1Q969X1 311 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 CENPNQ96H22 339 aaPredicted RBP0.38□□□□□ -2.35
SCN1A-208ENST00000625916 GLT1D1Q96MS3 346 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 RETNLBQ9BQ08 111 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 DIABLOQ9NR28 239 aa0.38□□□□□ -2.35
SCN1A-208ENST00000625916 LCTP09848 1927 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms