RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FAM90A10PA6NDY2 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A18PA6NE21 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A16PA6NEW6 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A20PA6NIJ5 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A8PA6NJQ4 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A7PA6NKC0 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A22PA8MWA6 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 TMEM14DPA8MWL7 114 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A12PA8MX19 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A5PA8MXJ8 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A23PA8MXZ1 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 MPIG6BO95866 241 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A15PP0C7V4 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A13PP0C7W8 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A14PP0C7W9 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM90A24PP0C7X0 464 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 ARSBP15848 533 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 CFPP27918 469 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 TMBIM6P55061 237 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 DLX1P56177 255 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 CLDN12P56749 244 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 SCGB2A2Q13296 93 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 KRBOX4Q5JUW0 171 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 ATAD3CQ5T2N8 411 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 HES5Q5TA89 166 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 GPR157Q5UAW9 335 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 RAB2BQ8WUD1 216 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 TNFRSF14Q92956 283 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 LHX4Q969G2 390 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 CENPOQ9BU64 300 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 RCC2Q9P258 522 aaKnown RBP13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 ZNF69Q9UC07 566 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 STEAP1Q9UHE8 339 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 LINC00312Q9Y6C7 94 aa13.57□□□□□ -0.24
CCDC28A-202ENST00000611852 IFITM5A6NNB3 132 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 IFNA2P01563 188 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 ZNF728P0DKX0 622 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 PRTN3P24158 256 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 KCNJ3P48549 501 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 RPS27AP62979 156 aaKnown RBP13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 PAX5Q02548 391 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 PRB3Q04118 309 aaPredicted RBP13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 TIMM50Q3ZCQ8 353 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 TPRA1Q86W33 373 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 OR51D1Q8NGF3 324 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 PLPPR1Q8TBJ4 325 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 C22orf15Q8WYQ4 148 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 FAM3DQ96BQ1 224 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 ZNF714Q96N38 554 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 FUNDC2Q9BWH2 189 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 TMEM59Q9BXS4 323 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 SPACA1Q9HBV2 294 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 ING3Q9NXR8 418 aa13.56□□□□□ -0.24
CCDC28A-202ENST00000611852 KIAA2026Q5HYC2 2103 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 ODAMA1E959 279 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 SMIM30A4D0T7 59 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 C17orf98A8MV24 154 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 AIPO00170 330 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 SDC2P34741 201 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 ERVFRD-1P60508 538 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 RSBN1Q5VWQ0 802 aaPredicted RBP13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 SIGIRRQ6IA17 410 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 BRICD5Q6PL45 260 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 BRD3OSQ6XYD6 125 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 GDPGP1Q6ZNW5 385 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 C9orf139Q6ZV77 190 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 OR2W3Q7Z3T1 314 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 PDZD9Q8IXQ8 264 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 BCL6BQ8N143 479 aaPredicted RBP13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 BCL7BQ9BQE9 202 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 TM2D1Q9BX74 207 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 BARHL1Q9BZE3 327 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 MS4A7Q9GZW8 240 aaPredicted RBP13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 FBLN5Q9UBX5 448 aa13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 UBE2J1Q9Y385 318 aaPredicted RBP13.55□□□□□ -0.24
CCDC28A-202ENST00000611852 TRGV10A0A0A0MS01 117 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 IGHV1-69DA0A0B4J2H0 117 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 hCG_1809904A0A1W2PP81 198 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 A0A1W2PPE2 198 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 A0A1W2PR64 198 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 A0A1W2PRV1 198 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 RNASEK-C17orf49H0YIS7 233 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 LDLRAD4O15165 306 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 AIREO43918 545 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 IGHV1-69P01742 117 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 RBP4P02753 201 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 FPR2P25090 351 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 RANBP1P43487 201 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 BPIFB3P59826 476 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 KLRD1Q13241 179 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 TUSC1Q2TAM9 212 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 C2orf76Q3KRA6 126 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 RAB12Q6IQ22 244 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 TRAPPC6BQ86SZ2 158 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 ANKRD13BQ86YJ7 626 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 CORO2AQ92828 525 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 NCOR1P1Q9H4R4 102 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 PTTG2Q9NZH5 202 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 KIF25Q9UIL4 384 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 NOTOA8MTQ0 251 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms