RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 FAM90A16PA6NEW6 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A20PA6NIJ5 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A9PA6NNJ1 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A12PA8MX19 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A5PA8MXJ8 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 OOSP1A8MZH6 123 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 H0YJX3 145 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 MPZL2O60487 215 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A15PP0C7V4 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A13PP0C7W8 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A14PP0C7W9 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM90A24PP0C7X0 464 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM106CPP0CH98 169 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 IGLL1P15814 213 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 CD33P20138 364 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 NFYBP25208 207 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 C21orf33P30042 268 aaPredicted RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 CEACAM3P40198 252 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 OR3A4PP47883 348 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 MTNR1BP49286 362 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 GBX2P52951 348 aaPredicted RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 LOXL3P58215 753 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 RAB40BQ12829 278 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 MRPL28Q13084 256 aaKnown RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 RBM39Q14498 530 aaKnown RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 ATXN7L3Q14CW9 347 aaPredicted RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 FOXB2Q5VYV0 432 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 C10orf99Q6UWK7 81 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 SATL1Q86VE3 508 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 THNSL2Q86YJ6 484 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 Q8NFD4 153 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 PXT1Q8NFP0 134 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 OR52I1Q8NGK6 324 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 OR9G1Q8NH87 305 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 CNIH3Q8TBE1 160 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 MRAPQ8TCY5 172 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 PHF21AQ96BD5 680 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 KIRREL1Q96J84 757 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 C9orf16Q9BUW7 83 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 BARHL1Q9BZE3 327 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 LINC00574Q9H8X3 128 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 FAM118AQ9NWS6 357 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 AURKAIP1Q9NWT8 199 aaPredicted RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 DHDHQ9UQ10 334 aa6.07□□□□□ -1.44
CUX1-219ENST00000606749 RPL36Q9Y3U8 105 aaKnown RBP6.07□□□□□ -1.44
CUX1-219ENST00000606749 MEIKINA0A087WXM9 373 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 SH2D7A6NKC9 451 aaPredicted RBP6.06□□□□□ -1.44
CUX1-219ENST00000606749 NPIPB11E5RHQ5 1161 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 J3QR06 171 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 HSPB6O14558 160 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 PIN1P1O15428 100 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 MAGEB3O15480 346 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 IGHV3-7P01780 117 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 CCDC159P0C7I6 412 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 LIMS3P0CW19 117 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 LIMS4P0CW20 117 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 RAB3AP20336 220 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 MNDAP41218 407 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 GTF2A1P52655 376 aaPredicted RBP6.06□□□□□ -1.44
CUX1-219ENST00000606749 PAX5Q02548 391 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 ZSCAN26Q16670 478 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 KLHL22Q53GT1 634 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 PAN3Q58A45 887 aaKnown RBP6.06□□□□□ -1.44
CUX1-219ENST00000606749 RSBN1Q5VWQ0 802 aaPredicted RBP6.06□□□□□ -1.44
CUX1-219ENST00000606749 LPCAT4Q643R3 524 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 CCDC144NLQ6NUI1 221 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 ASCL4Q6XD76 172 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 CCDC121Q6ZUS5 278 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 C10orf67Q8IYJ2 551 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 OR51A2Q8NGJ7 313 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 OR13A1Q8NGR1 328 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 OR10K1Q8NGX5 313 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 TSEN15Q8WW01 171 aaKnown RBP6.06□□□□□ -1.44
CUX1-219ENST00000606749 RGP1Q92546 391 aaPredicted RBP6.06□□□□□ -1.44
CUX1-219ENST00000606749 LEAP2Q969E1 77 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 MYDGFQ969H8 173 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 RPEQ96AT9 228 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 CALYQ9NYX4 217 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 IDI2-AS1Q9NZ38 188 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 KIF25Q9UIL4 384 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 PSG11Q9UQ72 335 aa6.06□□□□□ -1.44
CUX1-219ENST00000606749 TSSC4Q9Y5U2 329 aaPredicted RBP6.06□□□□□ -1.44
CUX1-219ENST00000606749 NOTCH3Q9UM47 2321 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 TRAV39A0A0B4J263 110 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 M0QZK8 103 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 GABRPO00591 440 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 CDRT1O95170 752 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 HTR3BO95264 441 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 PF4V1P10720 104 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 GLP1RP43220 463 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 SOX2P48431 317 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 KCNJ3P48549 501 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 ETV1P50549 477 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 DIAPH2-AS1Q14236 149 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 IL13RA2Q14627 380 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 RSU1Q15404 277 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 SMN1Q16637 294 aaKnown RBP6.05□□□□□ -1.44
CUX1-219ENST00000606749 PIGYQ3MUY2 71 aa6.05□□□□□ -1.44
CUX1-219ENST00000606749 CCDC58Q4VC31 144 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms