RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MAP1LC3B2A6NCE7 125 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 C19orf57Q0VDD7 668 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 METTL26Q96S19 204 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 MAP1LC3BQ9GZQ8 125 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 GP6Q9HCN6 339 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 ZMAT5Q9UDW3 170 aaKnown RBP17.95■□□□□ 0.46
UPF1-207ENST00000599848 MMP24Q9Y5R2 645 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 NPIPB6E9PJ23 425 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 CFDP00746 253 aaPredicted RBP17.95■□□□□ 0.46
UPF1-207ENST00000599848 PATE4P0C8F1 98 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 ROM1Q03395 351 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 PARP12Q9H0J9 701 aaKnown RBP17.95■□□□□ 0.46
UPF1-207ENST00000599848 MTFP1Q9UDX5 166 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 ANXA10Q9UJ72 324 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 PSG6Q00889 435 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 UBALD1Q8TB05 177 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 NDUFB6O95139 128 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 PRDX2P32119 198 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 STARD4Q96DR4 205 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 PRDM14Q9GZV8 571 aa17.95■□□□□ 0.46
UPF1-207ENST00000599848 OR2A4O95047 310 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 CXorf66Q5JRM2 361 aaPredicted RBP17.94■□□□□ 0.46
UPF1-207ENST00000599848 LINC00052Q96N35 136 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 OR2A7Q96R45 310 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 DCTN5Q9BTE1 182 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 DUXBA0A1W2PPF3 345 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 TRIM77I1YAP6 450 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 TOX4O94842 621 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 BHLHA9Q7RTU4 235 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 UCP2P55851 309 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 TMEM116Q8NCL8 245 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 C20orf141Q9NUB4 165 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 ZMIZ1Q9ULJ6 1067 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 LRP5O75197 1615 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 A0A1W2PPQ1 181 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 J3QW42 95 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 TSPOP30536 169 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 LRRC75BQ2VPJ9 315 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 FAM27BQ5VT28 67 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 MAMSTRQ6ZN01 415 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 MMD2Q8IY49 270 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 OR10J6PQ8NGY7 276 aa17.94■□□□□ 0.46
UPF1-207ENST00000599848 SPINT1O43278 529 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 ZFPL1O95159 310 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 Q6ZN92 141 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 OR2C3Q8N628 320 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 CELF2-AS1Q8N7Q2 184 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 OR5H6Q8NGV6 325 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 Q9N2K0 584 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 SYNGR2O43760 224 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 NEURL1O76050 574 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 RPL27AP46776 148 aaKnown RBP17.93■□□□□ 0.46
UPF1-207ENST00000599848 RAG2P55895 527 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 WNT3P56703 355 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 C10orf113Q5VZT2 155 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 FDX2Q6P4F2 183 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 KIAA0040Q15053 153 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 OR10G4Q8NGN3 311 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 OR10G9Q8NGN4 311 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 OR10G7Q8NGN6 311 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 MFSD2BA6NFX1 497 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 BCL3P20749 454 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 C11orf87Q6NUJ2 197 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 NEU4Q8WWR8 484 aaPredicted RBP17.93■□□□□ 0.46
UPF1-207ENST00000599848 PARP11Q9NR21 331 aa17.93■□□□□ 0.46
UPF1-207ENST00000599848 TRAV30A0A087WSZ9 112 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 CHST1O43916 411 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 PTHLHP12272 177 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 PDZK1IP1Q13113 114 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 DTD1Q8TEA8 209 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 NKX6-2Q9C056 277 aaPredicted RBP17.92■□□□□ 0.46
UPF1-207ENST00000599848 PLEKHB1Q9UF11 243 aaPredicted RBP17.92■□□□□ 0.46
UPF1-207ENST00000599848 RPEL1Q2QD12 228 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 OPN3Q9H1Y3 402 aaPredicted RBP17.92■□□□□ 0.46
UPF1-207ENST00000599848 A0A1B0GUL6 1792 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 SYNGR3O43761 229 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 RELBQ01201 579 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 KHDC3LQ587J8 217 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 NECAP1Q8NC96 275 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 ZNF721Q8TF20 911 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 SNRNP40Q96DI7 357 aaKnown RBP17.92■□□□□ 0.46
UPF1-207ENST00000599848 MOGAT1Q96PD6 335 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 FXYD1O00168 92 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 C1QAP02745 245 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 OTPQ5XKR4 325 aa17.92■□□□□ 0.46
UPF1-207ENST00000599848 SNX22Q96L94 193 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 CHST5Q9GZS9 411 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 BGLAPP02818 100 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 RNFT1Q5M7Z0 435 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 RBM14Q96PK6 669 aaKnown RBP17.91■□□□□ 0.46
UPF1-207ENST00000599848 OR2W1Q9Y3N9 320 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 CD226Q15762 336 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 C9orf40Q8IXQ3 194 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 AMER3Q8N944 861 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 RNF133Q8WVZ7 376 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 SLC25A33Q9BSK2 321 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 PDGFAP04085 211 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 TMEM241Q24JQ0 296 aa17.91■□□□□ 0.46
UPF1-207ENST00000599848 GLDNQ6ZMI3 551 aaPredicted RBP17.91■□□□□ 0.46
UPF1-207ENST00000599848 OR5C1Q8NGR4 320 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms