RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 GEMIN2O14893 280 aaKnown RBP11.28□□□□□ -0.6
UPF1-205ENST00000598209 CLPXO76031 633 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 OR7C1O76099 320 aaPredicted RBP11.28□□□□□ -0.6
UPF1-205ENST00000598209 IGHV4-59P01825 116 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 SRMP19623 302 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 PSMA1P25786 263 aaKnown RBP11.28□□□□□ -0.6
UPF1-205ENST00000598209 IER3P46695 156 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 EMX1Q04741 257 aaPredicted RBP11.28□□□□□ -0.6
UPF1-205ENST00000598209 MPV17LQ2QL34 196 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 SVOPQ8N4V2 548 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 SUMF2Q8NBJ7 301 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 OR13D1Q8NGV5 346 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 C17orf50Q8WW18 174 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 CORO2AQ92828 525 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 YTHDF1Q9BYJ9 559 aaKnown RBP11.28□□□□□ -0.6
UPF1-205ENST00000598209 CHIAQ9BZP6 476 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 IFT22Q9H7X7 185 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 TAS2R3Q9NYW6 316 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 SESN1Q9Y6P5 492 aa11.28□□□□□ -0.6
UPF1-205ENST00000598209 DNHD1Q96M86 4753 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 MMP23AO75900 390 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 HKR1P10072 659 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 KCNJ3P48549 501 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 LGALS4P56470 323 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 FABP5Q01469 135 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 SSX1Q16384 188 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 TAF9Q16594 264 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 ATAD3CQ5T2N8 411 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 GLT8D1Q68CQ7 371 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 C12orf54Q6X4T0 127 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 PLPPR1Q8TBJ4 325 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 FOXRED1Q96CU9 486 aaPredicted RBP11.27□□□□□ -0.61
UPF1-205ENST00000598209 MRPS24Q96EL2 167 aaKnown RBP11.27□□□□□ -0.61
UPF1-205ENST00000598209 AJUBAQ96IF1 538 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 DPCDQ9BVM2 203 aaPredicted RBP11.27□□□□□ -0.61
UPF1-205ENST00000598209 BARHL1Q9BZE3 327 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 SLITRK2Q9H156 845 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 DPAGT1Q9H3H5 408 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 GAL3ST2Q9H3Q3 398 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 BANF2Q9H503 90 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 OR6C3Q9NZP0 311 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 KIF25Q9UIL4 384 aa11.27□□□□□ -0.61
UPF1-205ENST00000598209 MEIKINA0A087WXM9 373 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 ODF3BA8MYP8 253 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 CRTAPO75718 401 aaPredicted RBP11.26□□□□□ -0.61
UPF1-205ENST00000598209 ARL6IP5O75915 188 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 ARG1P05089 322 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 MGMTP16455 207 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 GABRA5P31644 462 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 GLP1RP43220 463 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 C1orf100Q5SVJ3 147 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 PRAMEF5Q5TYX0 476 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 RSBN1Q5VWQ0 802 aaPredicted RBP11.26□□□□□ -0.61
UPF1-205ENST00000598209 ZNF626Q68DY1 528 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 SPARTQ8N0X7 666 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 BEND2Q8NDZ0 799 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 TMEM104Q8NE00 496 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 OR11H6Q8NGC7 330 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 TMEM133Q9H2Q1 129 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 NCOR1P1Q9H4R4 102 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 GHRLQ9UBU3 117 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 LRRC42Q9Y546 428 aa11.26□□□□□ -0.61
UPF1-205ENST00000598209 IGHV2-26A0A0B4J1V2 119 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 BTBD17A6NE02 478 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 FAM181BA6NEQ2 426 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 ZNF729A6NN14 1252 aaPredicted RBP11.25□□□□□ -0.61
UPF1-205ENST00000598209 OMGP23515 440 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 CDK2P24941 298 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 PAX6P26367 422 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 COMPP49747 757 aaPredicted RBP11.25□□□□□ -0.61
UPF1-205ENST00000598209 PAX5Q02548 391 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 DYNC1I2Q13409 638 aaKnown RBP11.25□□□□□ -0.61
UPF1-205ENST00000598209 AWAT1Q58HT5 328 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 UBE2UQ5VVX9 321 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 BRICD5Q6PL45 260 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 HEPN1Q6WQI6 88 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 LHFPL4Q7Z7J7 247 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 OR13A1Q8NGR1 328 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 NEK7Q8TDX7 302 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 TAF15Q92804 592 aaKnown RBP eCLIP11.25□□□□□ -0.61
UPF1-205ENST00000598209 FAM46BQ96A09 425 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 CLEC7AQ9BXN2 247 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 SELENOIQ9C0D9 397 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 MEGF9Q9H1U4 602 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 NDUFB11Q9NX14 153 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 TBL2Q9Y4P3 447 aaKnown RBP11.25□□□□□ -0.61
UPF1-205ENST00000598209 STAB1Q9NY15 2570 aa11.25□□□□□ -0.61
UPF1-205ENST00000598209 KBTBD11-OT1A0A1B0GTJ5 212 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 FAM90A8PA6NJQ4 464 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 GPR137BO60478 399 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 CRYBA1P05813 215 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 UBBP0CG47 229 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 CGB3P0DN86 165 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 CGB7P0DN87 165 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 CD37P11049 281 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 CALRP27797 417 aaKnown RBP11.24□□□□□ -0.61
UPF1-205ENST00000598209 HTR2CP28335 458 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 GDNFP39905 211 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 FOXL1Q12952 345 aa11.24□□□□□ -0.61
UPF1-205ENST00000598209 C17orf58Q2M2W7 97 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms