RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 TMEM82A0PJX8 343 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 FAM157AC9JC47 383 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 CLDN25C9JDP6 229 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 SIRPB1O00241 398 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 SLC33A1O00400 549 aaPredicted RBP7.84□□□□□ -1.15
TRIM28-208ENST00000597172 SSX4O60224 188 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 PSPNO60542 156 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 PDCD6O75340 191 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 FCN3O75636 299 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 OR7C1O76099 320 aaPredicted RBP7.84□□□□□ -1.15
TRIM28-208ENST00000597172 VENTXO95231 258 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 MELTFP08582 738 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4L2P0CJ85 424 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4L3P0CJ86 424 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4L4P0CJ87 422 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4L5P0CJ88 424 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4L6P0CJ89 424 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4L7P0CJ90 424 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 IGHV4-31P0DP07 118 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 FUT3P21217 361 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 MNDAP41218 407 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 TAS2R20P59543 309 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 BTG1P62324 171 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 COL10A1Q03692 680 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 FAM189A2Q15884 450 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF79Q15937 498 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 AVPI1Q5T686 147 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4L9Q6RFH8 374 aaPredicted RBP7.84□□□□□ -1.15
TRIM28-208ENST00000597172 LYPD2Q6UXB3 125 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF788Q6ZQV5 615 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 C17orf107Q6ZR85 190 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 BPIFB2Q8N4F0 458 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 SUMF2Q8NBJ7 301 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 CHST4Q8NCG5 386 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 OR4M2Q8NGB6 313 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 ST8SIA4Q92187 359 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 RAB3CQ96E17 227 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 SDSLQ96GA7 329 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 CCL13Q99616 98 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 SDHCQ99643 169 aaPredicted RBP7.84□□□□□ -1.15
TRIM28-208ENST00000597172 SULT4A1Q9BR01 284 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM246Q9BRR3 403 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 FAAP24Q9BTP7 215 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 AUNIPQ9H7T9 357 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DNAJB11Q9UBS4 358 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 DUX4Q9UBX2 424 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 HSF4Q9ULV5 492 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 MRPS7Q9Y2R9 242 aaKnown RBP7.84□□□□□ -1.15
TRIM28-208ENST00000597172 TANC2Q9HCD6 1990 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 MEIOCA2RUB1 952 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 TMEM235A6NFC5 223 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 MFNGO00587 321 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 PPIHO43447 177 aaKnown RBP7.83□□□□□ -1.16
TRIM28-208ENST00000597172 ZNF737O75373 536 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 SCGNO76038 276 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 TPPPO94811 219 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 SELLP14151 372 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 ZNF44P15621 663 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 HIST1H1DP16402 221 aaKnown RBP7.83□□□□□ -1.16
TRIM28-208ENST00000597172 PTBP1P26599 531 aaKnown RBP eCLIP7.83□□□□□ -1.16
TRIM28-208ENST00000597172 GIFP27352 417 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 NR4A2P43354 598 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 GABRA2P47869 451 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 NKAPLQ5M9Q1 402 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 SPANXN2Q5MJ10 180 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 TMEM69Q5SWH9 247 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 ATAD3CQ5T2N8 411 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 FIP1L1Q6UN15 594 aaKnown RBP7.83□□□□□ -1.16
TRIM28-208ENST00000597172 FAM131AQ6UXB0 335 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 ZNRF1Q8ND25 227 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 OR4S1Q8NGB4 309 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 DYRK2Q92630 601 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 GAFA1Q96PS6 74 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 NEDD4LQ96PU5 975 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 TSC22D3Q99576 134 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 DPCDQ9BVM2 203 aaPredicted RBP7.83□□□□□ -1.16
TRIM28-208ENST00000597172 BARX1Q9HBU1 254 aaPredicted RBP7.83□□□□□ -1.16
TRIM28-208ENST00000597172 PLEKHJ1Q9NW61 149 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 GLS2Q9UI32 602 aa7.83□□□□□ -1.16
TRIM28-208ENST00000597172 A0A0A6YYJ9 748 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 UBE2QL1A1L167 161 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 MCRIP1C9JLW8 97 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 K7N7A8 449 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 SIGLEC5O15389 551 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 SSX5O60225 188 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 GLAP06280 429 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 GSTP1P09211 210 aaKnown RBP7.82□□□□□ -1.16
TRIM28-208ENST00000597172 TALDO1P37837 337 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 MDH2P40926 338 aaKnown RBP7.82□□□□□ -1.16
TRIM28-208ENST00000597172 OR3A1P47881 315 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 GZMKP49863 264 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 PDLIM4P50479 330 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 ZNF45Q02386 682 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 GUCA2AQ02747 115 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 IL18Q14116 193 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 CARTPTQ16568 116 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 HACD4Q5VWC8 232 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 PYHIN1Q6K0P9 492 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 SHISA2Q6UWI4 295 aa7.82□□□□□ -1.16
TRIM28-208ENST00000597172 ZNF841Q6ZN19 808 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms