RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 CLEC20AQ6ZU45 233 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 FAM19A5Q7Z5A7 132 aaPredicted RBP4.9□□□□□ -1.63
VMP1-208ENST00000588617 OR9A2Q8NGT5 310 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 DTD1Q8TEA8 209 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 OLFM3Q96PB7 478 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 DHRS9Q9BPW9 319 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 EBPLQ9BY08 206 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 ZNF430Q9H8G1 570 aaPredicted RBP4.9□□□□□ -1.63
VMP1-208ENST00000588617 CELA1Q9UNI1 258 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 POMPQ9Y244 141 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.9□□□□□ -1.63
VMP1-208ENST00000588617 ABCC8Q09428 1581 aa4.9□□□□□ -1.63
VMP1-208ENST00000588617 PTPRTO14522 1441 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 STX10O60499 249 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 TYMSP04818 313 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 C8orf88P0DMB2 117 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 NEFHP12036 1026 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 CD99P14209 185 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 FAM53BQ14153 422 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 KLHL12Q53G59 568 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 SHISA6Q6ZSJ9 500 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 SLC25A45Q8N413 288 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 PPCDCQ96CD2 204 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 PRSS27Q9BQR3 290 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 MS4A8Q9BY19 250 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 CHST5Q9GZS9 411 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 SLC22A4Q9H015 551 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 BTRCQ9Y297 605 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 BIVM-ERCC5R4GMW8 1640 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 RIMS2Q9UQ26 1411 aa4.89□□□□□ -1.63
VMP1-208ENST00000588617 SYNJ1O43426 1573 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 AHDC1Q5TGY3 1603 aaPredicted RBP4.88□□□□□ -1.63
VMP1-208ENST00000588617 IGHV1-3A0A0C4DH29 117 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 CCNKO75909 580 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 IFNA5P01569 189 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 CD28P10747 220 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 CDKN2CP42773 168 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 NKX2-5P52952 324 aaPredicted RBP4.88□□□□□ -1.63
VMP1-208ENST00000588617 C1QTNF8P60827 252 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 ELF3P78545 371 aaPredicted RBP4.88□□□□□ -1.63
VMP1-208ENST00000588617 TMEM241Q24JQ0 296 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 Q5W150 140 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.88□□□□□ -1.63
VMP1-208ENST00000588617 SPNS3Q6ZMD2 512 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 MTERF4Q7Z6M4 381 aaKnown RBP4.88□□□□□ -1.63
VMP1-208ENST00000588617 CPNE9Q8IYJ1 553 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 ZIC4Q8N9L1 334 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 PIGXQ8TBF5 258 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 CDCA4Q9BXL8 241 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 MS4A6AQ9H2W1 248 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 LRRC19Q9H756 370 aa4.88□□□□□ -1.63
VMP1-208ENST00000588617 YTHDF2Q9Y5A9 579 aaKnown RBP4.88□□□□□ -1.63
VMP1-208ENST00000588617 MIA3Q5JRA6 1907 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 ADAMTS9Q9P2N4 1935 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 CROCCQ5TZA2 2017 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 PRDM2Q13029 1718 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 CXorf1O96002 111 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 SERPINA6P08185 405 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 LINC00869P0C866 280 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 CEBPGP53567 150 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 GTF2BQ00403 316 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 FADDQ13158 208 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 LRRC26Q2I0M4 334 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 UBALD2Q8IYN6 164 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 SAXO1Q8IYX7 474 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 PTH2Q96A98 100 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 CHMP6Q96FZ7 201 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 THTPAQ9BU02 230 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 MRPS26Q9BYN8 205 aaKnown RBP4.87□□□□□ -1.63
VMP1-208ENST00000588617 PSTPIP2Q9H939 334 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 BABAM2Q9NXR7 383 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 C3orf18Q9UK00 162 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 FANCD2Q9BXW9 1451 aa4.87□□□□□ -1.63
VMP1-208ENST00000588617 CXCR6O00574 342 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 TCF21O43680 179 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 ZNF7P17097 686 aaPredicted RBP4.86□□□□□ -1.63
VMP1-208ENST00000588617 HSPA13P48723 471 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 TGM4P49221 684 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 NUDT2P50583 147 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 AP2S1P53680 142 aaPredicted RBP4.86□□□□□ -1.63
VMP1-208ENST00000588617 BTN1A1Q13410 526 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 PAFAH1B3Q15102 231 aaKnown RBP4.86□□□□□ -1.63
VMP1-208ENST00000588617 UAP1Q16222 522 aaPredicted RBP4.86□□□□□ -1.63
VMP1-208ENST00000588617 CST9Q5W186 159 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 C10orf67Q8IYJ2 551 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 UBALD1Q8TB05 177 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 FOPNLQ96NB1 174 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 RNF5Q99942 180 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 VCXQ9H320 206 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 HRASLSQ9HDD0 168 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 NOS1P29475 1434 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 CUX1P39880 1505 aa4.86□□□□□ -1.63
VMP1-208ENST00000588617 C21orf140B9A014 251 aa4.85□□□□□ -1.63
VMP1-208ENST00000588617 MAGEB4O15481 346 aaPredicted RBP4.85□□□□□ -1.63
VMP1-208ENST00000588617 MED6O75586 246 aa4.85□□□□□ -1.63
VMP1-208ENST00000588617 CFL1P23528 166 aaKnown RBP4.85□□□□□ -1.63
VMP1-208ENST00000588617 SLC6A1P30531 599 aa4.85□□□□□ -1.63
VMP1-208ENST00000588617 MPIP34949 423 aa4.85□□□□□ -1.63
VMP1-208ENST00000588617 SKP2Q13309 424 aa4.85□□□□□ -1.63
VMP1-208ENST00000588617 C1DQ13901 141 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms