RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SEM1Q6ZVN7 128 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 MYPOPQ86VE0 399 aaPredicted RBP9.6□□□□□ -0.87
LIG3-204ENST00000585740 SUMF2Q8NBJ7 301 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 INO80EQ8NBZ0 244 aaPredicted RBP9.6□□□□□ -0.87
LIG3-204ENST00000585740 OR8G5Q8NG78 346 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 KLF14Q8TD94 323 aaPredicted RBP9.6□□□□□ -0.87
LIG3-204ENST00000585740 GALNT14Q96FL9 552 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 MARS2Q96GW9 593 aaKnown RBP9.6□□□□□ -0.87
LIG3-204ENST00000585740 CCDC120Q96HB5 630 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 SEC22AQ96IW7 307 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 RSRP1Q9BUV0 290 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 OPN3Q9H1Y3 402 aaPredicted RBP9.6□□□□□ -0.87
LIG3-204ENST00000585740 CXXC4Q9H2H0 198 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 NAA60Q9H7X0 242 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 METTL8Q9H825 291 aaKnown RBP9.6□□□□□ -0.87
LIG3-204ENST00000585740 GLS2Q9UI32 602 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 SPEF1Q9Y4P9 236 aa9.6□□□□□ -0.87
LIG3-204ENST00000585740 TRBV6-7A0A0A0MS04 114 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 PIGBOS1A0A0B4J2F0 54 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 FAM221AA4D161 298 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 F8VVB4 439 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 F8VWA3 439 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 DEGS1O15121 323 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 AGFG2O95081 481 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 PDGFAP04085 211 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 TK1P04183 234 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 PGA5P0DJD9 388 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 CEACAM8P31997 349 aaPredicted RBP9.59□□□□□ -0.87
LIG3-204ENST00000585740 AP2S1P53680 142 aaPredicted RBP9.59□□□□□ -0.87
LIG3-204ENST00000585740 PIGPP57054 158 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 RND3P61587 244 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 SRPXP78539 464 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 ANKRD55Q3KP44 614 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 SPIN3Q5JUX0 258 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 MBNL2Q5VZF2 373 aaKnown RBP9.59□□□□□ -0.87
LIG3-204ENST00000585740 ZNF880Q6PDB4 577 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 SCCPDHQ8NBX0 429 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 SCARB1Q8WTV0 552 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 TOMM40LQ969M1 308 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 USB1Q9BQ65 265 aaKnown RBP9.59□□□□□ -0.87
LIG3-204ENST00000585740 GSX2Q9BZM3 304 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 WDR13Q9H1Z4 485 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 PIGMQ9H3S5 423 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 ZFP57Q9NU63 452 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 RDH8Q9NYR8 311 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 KIF25Q9UIL4 384 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 FBXO9Q9UK97 447 aaPredicted RBP9.59□□□□□ -0.87
LIG3-204ENST00000585740 FAM215AQ9Y5M1 114 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 SLC25A15Q9Y619 301 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 ATP23Q9Y6H3 246 aa9.59□□□□□ -0.87
LIG3-204ENST00000585740 HEATR1Q9H583 2144 aaKnown RBP9.59□□□□□ -0.87
LIG3-204ENST00000585740 IGHV2OR16-5A0A0B4J2B6 119 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 IGHV1-18A0A0C4DH31 117 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 A0A1B0GW55 424 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 ANKRD34BA5PLL1 514 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 B8ZZF3 427 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 SH2D1BO14796 132 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 BCL2L11O43521 198 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 TIMM8AO60220 97 aaPredicted RBP9.58□□□□□ -0.88
LIG3-204ENST00000585740 PPYP01298 95 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DUX4L2P0CJ85 424 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DUX4L3P0CJ86 424 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DUX4L4P0CJ87 422 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DUX4L5P0CJ88 424 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DUX4L6P0CJ89 424 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DUX4L7P0CJ90 424 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 LYL1P12980 280 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 ZNF44P15621 663 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 AADACP22760 399 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 ERVS71-1P61550 626 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 ERVK11-1P61568 191 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 HLA-DRB3P79483 266 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 SRSF1Q07955 248 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIG3-204ENST00000585740 ESCO2Q56NI9 601 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 ZNF324BQ6AW86 544 aaPredicted RBP9.58□□□□□ -0.88
LIG3-204ENST00000585740 Q6P435 159 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 PRSS54Q6PEW0 395 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 SPACA3Q8IXA5 215 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 BATF2Q8N1L9 274 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 LRTM2Q8N967 370 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 ZNF565Q8N9K5 539 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 POC1AQ8NBT0 407 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 OR4A4PQ8NGN8 299 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 MRPL30Q8TCC3 161 aaKnown RBP9.58□□□□□ -0.88
LIG3-204ENST00000585740 RTN4IP1Q8WWV3 396 aaPredicted RBP9.58□□□□□ -0.88
LIG3-204ENST00000585740 NRIP2Q9BQI9 281 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 RASL12Q9NYN1 266 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DNAJB11Q9UBS4 358 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 DUX4Q9UBX2 424 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 PCDHB10Q9UN67 800 aa9.58□□□□□ -0.88
LIG3-204ENST00000585740 TRAV24A0A0B4J272 114 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 PRRG2O14669 202 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 NXPH2O95156 264 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 CFDP00746 253 aaPredicted RBP9.57□□□□□ -0.88
LIG3-204ENST00000585740 S100GP29377 79 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 MPV17P39210 176 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 FXYD4P59646 89 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 NAAAQ02083 359 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 ZNF154Q13106 437 aa9.57□□□□□ -0.88
LIG3-204ENST00000585740 LY6DQ14210 128 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms