RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 CDC40O60508 579 aaKnown RBP eCLIP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 SNAPINO95295 136 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 TIMP1P01033 207 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 IGKV1D-16P01601 117 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 STATHP02808 62 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 NPIPA8P0DM63 369 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR8G3PP0DMU2 310 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CT45A8P0DMV1 189 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CT45A9P0DMV2 189 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PTHLHP12272 177 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 TBPP20226 339 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 AK4P27144 223 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PSMB6P28072 239 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 FCGR2BP31994 310 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 MAS1LP35410 378 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RPL4P36578 427 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RFC3P40938 356 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PMELP40967 661 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 KIR3DL2P43630 455 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 POU3F4P49335 361 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ARRB1P49407 418 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ATP5IP56385 69 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CLDN17P56750 224 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RAB38P57729 211 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 UBE2MP61081 183 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ERVK-25P63136 954 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 BTG2P78543 158 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 FUT7Q11130 342 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 SERTAD2Q14140 314 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 EXOSC7Q15024 291 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNHIT3Q15649 155 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CST6Q15828 149 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RAB11BQ15907 218 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF74Q16587 644 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PCK2Q16822 640 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF528Q3MIS6 628 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 DEFB134Q4QY38 66 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 HIGD2BQ4VC39 106 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 FAM74A3Q4VXF1 159 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CT45A2Q5DJT8 189 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ELP2Q6IA86 826 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 LEG1Q6P5S2 330 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 DEGS2Q6QHC5 323 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 IL34Q6ZMJ4 242 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 DGAT2L6Q6ZPD8 337 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 C17orf107Q6ZR85 190 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR2W3Q7Z3T1 314 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 FAM220AQ7Z4H9 259 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 LYG2Q86SG7 212 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 BAP18Q8IXM2 172 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 GCNT2Q8N0V5 402 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PUSL1Q8N0Z8 303 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CA13Q8N1Q1 262 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ABHD12Q8N2K0 398 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 KLHDC1Q8N7A1 406 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF676Q8N7Q3 588 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RELL2Q8NC24 303 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR52R1Q8NGF1 315 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR4D10Q8NGI6 311 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR51L1Q8NGJ5 315 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR1J4Q8NGS1 313 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR13C3Q8NGS6 347 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR13C8Q8NGS7 320 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 AKR7LQ8NHP1 331 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OTOSQ8NHW6 89 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 SAP25Q8TEE9 199 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 GLYATL2Q8WU03 294 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 GATAD1Q8WUU5 269 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 TNFAIP8L1Q8WVP5 186 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 LCN9Q8WX39 176 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 METTL21AQ8WXB1 218 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RLN3Q8WXF3 142 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 AQP3Q92482 292 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 FGF13Q92913 245 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 SMARCD2Q92925 531 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM106AQ96A25 262 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PINX1Q96BK5 328 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RAB39BQ96DA2 213 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PIK3IP1Q96FE7 263 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 C4orf45Q96LM5 186 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 VSTM2LQ96N03 204 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 OR8B4Q96RC9 309 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 MAP3K3Q99759 626 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 SLC6A7Q99884 636 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 PRRT1Q99946 306 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CCDC3Q9BQI4 270 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RNF126Q9BV68 326 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 NMES1Q9C002 83 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 SRMSQ9H3Y6 488 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 EXO5Q9H790 373 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM185BQ9H7F4 350 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 TUBA4BQ9H853 241 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RNF122Q9H9V4 155 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CHST11Q9NPF2 352 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 TMEM138Q9NPI0 162 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CYTL1Q9NRR1 136 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 CTSFQ9UBX1 484 aa3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 ZNF629Q9UEG4 869 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 MRTO4Q9UKD2 239 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-208ENST00000583344 RAB22AQ9UL26 194 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms