RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 AAED1Q7RTV5 226 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 NUFIP2Q7Z417 695 aaKnown RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 CALHM3Q86XJ0 350 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 C10orf111Q8N326 155 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 MS4A15Q8N5U1 240 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 TPRX1Q8N7U7 411 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 MAPKAPK5-AS1Q8N8E1 139 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 SLC37A3Q8NCC5 494 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 LYPD6BQ8NI32 183 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 RPEQ96AT9 228 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ZNF524Q96C55 264 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 DNAJA3Q96EY1 480 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 OXGR1Q96P68 337 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ZNF300Q96RE9 604 aaPredicted RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 ARHGDIGQ99819 225 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 KCTD14Q9BQ13 255 aaPredicted RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 NICN1Q9BSH3 213 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 RSG1Q9BU20 258 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 ACTR6Q9GZN1 396 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 FNDC4Q9H6D8 234 aaPredicted RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 PATZ1Q9HBE1 687 aaKnown RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 ABCB10Q9NRK6 738 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 GMPPBQ9Y5P6 360 aa5.03□□□□□ -1.6
VPS53-212ENST00000572259 PRRC2AP48634 2157 aaKnown RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 MAP1AP78559 2803 aaPredicted RBP5.03□□□□□ -1.6
VPS53-212ENST00000572259 LOC102725191A0A1B0GVB3 256 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CPSF4LA6NMK7 179 aaKnown RBP5.02□□□□□ -1.61
VPS53-212ENST00000572259 ZNF726A6NNF4 738 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 FXYD1O00168 92 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 XPNPEP2O43895 674 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 NPIPB7O75200 414 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CD1EP15812 388 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CA6P23280 308 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CSNK1A1P48729 337 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 GZMMP51124 257 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 PSME3P61289 254 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 ST3GAL3Q11203 375 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 RIGQ13278 110 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 EIF2B1Q14232 305 aaKnown RBP5.02□□□□□ -1.61
VPS53-212ENST00000572259 FAM189A2Q15884 450 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 AKIRIN2Q53H80 203 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 TIMM23BQ5SRD1 257 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 SLC25A47Q6Q0C1 308 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CREB3L2Q70SY1 520 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CARM1Q86X55 608 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CDC20BQ86Y33 519 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 LINC01561Q8N1V8 128 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 OR6T1Q8NGN1 323 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 ADAMTS16Q8TE57 1224 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 GEMIN6Q8WXD5 167 aaKnown RBP5.02□□□□□ -1.61
VPS53-212ENST00000572259 TAMM41Q96BW9 452 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 PIK3IP1Q96FE7 263 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 SLC19A3Q9BZV2 496 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 B3GAT2Q9NPZ5 323 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 TAS2R16Q9NYV7 291 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 FAM32AQ9Y421 112 aaKnown RBP5.02□□□□□ -1.61
VPS53-212ENST00000572259 FLVCR1Q9Y5Y0 555 aa5.02□□□□□ -1.61
VPS53-212ENST00000572259 CYSRT1A8MQ03 144 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 INAFM1C9JVW0 142 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 ZNF587BE7ETH6 402 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 DCTN6O00399 190 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 CXCR6O00574 342 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 GOSR2O14653 212 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 GCM2O75603 506 aaPredicted RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 LYZL6O75951 148 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 ZNF682O95780 498 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 FAM107AO95990 144 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 IGKV2-30P06310 120 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 ITGA2P17301 1181 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 CTRB1P17538 263 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 LMO1P25800 156 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 GRPRP30550 384 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 CALCRP30988 508 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 ARR3P36575 388 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 RBM34P42696 430 aaKnown RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 YAP1P46937 504 aaKnown RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 CRISP1P54107 249 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 UBE2MP61081 183 aaKnown RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 UBE2KP61086 200 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 PUDPQ08623 228 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 GNMTQ14749 295 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 GABRA6Q16445 453 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 DGUOKQ16854 277 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 PGGHGQ32M88 737 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 COX19Q49B96 90 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 CTRB2Q6GPI1 263 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 THOC7Q6I9Y2 204 aaKnown RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 GLYATQ6IB77 296 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 FAHD1Q6P587 224 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 Q6ZVQ6 151 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 TSEN54Q7Z6J9 526 aaKnown RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 PGAM4Q8N0Y7 254 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 KIR3DL3Q8N743 410 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 ZNF433Q8N7K0 673 aaPredicted RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 TCEANCQ8N8B7 351 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 GPR32P1Q8NGA4 272 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 OR5T2Q8NGG2 359 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 OR4Q3Q8NH05 313 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 OR5J2Q8NH18 312 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 OR6X1Q8NH79 312 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms