RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MEX3AA1L020 520 aaKnown RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 B4DSR2 109 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 MFNGO00587 321 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 HSPB6O14558 160 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 MGST3O14880 152 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 NDUFB3O43676 98 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 TMEM127O75204 238 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 PDCD6O75340 191 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 OR7C1O76099 320 aaPredicted RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 NAPSAO96009 420 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 EIF4EP06730 217 aaKnown RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 ZNF44P15621 663 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 FUT3P21217 361 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 GABRR1P24046 479 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 ERP29P30040 261 aaKnown RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 GDNFP39905 211 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 VEGFCP49767 419 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 GZMKP49863 264 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 DVL1P1P54792 670 aaPredicted RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 DLX1P56177 255 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 P2RX3P56373 397 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 ERVFRD-1P60508 538 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 GNB2P62879 340 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 SCN1BQ07699 218 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 AESQ08117 197 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 DYNC1I2Q13409 638 aaKnown RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 ATXN7L3Q14CW9 347 aaPredicted RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 GRK1Q15835 563 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 CR1LQ2VPA4 569 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 C11orf91Q3C1V1 193 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 TMEM200BQ69YZ2 307 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 RAB12Q6IQ22 244 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 ZNF497Q6ZNH5 498 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 NLRC3Q7RTR2 1065 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 CROCCP3Q8IVE0 287 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 CMTM4Q8IZR5 234 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 OR4M1Q8NGD0 313 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 RAB40AQ8WXH6 277 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 TNFRSF14Q92956 283 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 TMEM186Q96B77 213 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 KCTD12Q96CX2 325 aaKnown RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 ARHGAP5-AS1Q96IT6 56 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 S100A13Q99584 98 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 HDHD3Q9BSH5 251 aaPredicted RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 PECRQ9BY49 303 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 ABCG5Q9H222 651 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS35-211ENST00000569950 RHBDL2Q9NX52 303 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 CCDC59Q9P031 241 aaKnown RBP7.64□□□□□ -1.19
VPS35-211ENST00000569950 ABRACLQ9P1F3 81 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 HSF4Q9ULV5 492 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 ETV7Q9Y603 341 aa7.64□□□□□ -1.19
VPS35-211ENST00000569950 JMJD1CQ15652 2540 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 A0A075B6Q4 140 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 LOC105371242A0A075B767 164 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 TRBV23-1A0A0A0MS06 115 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 TRAV39A0A0B4J263 110 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 TRAV20A0A0B4J274 112 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 CTDSP2O14595 271 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 GPR37O15354 613 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 FOXH1O75593 365 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 MMP23AO75900 390 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 MT-ND4P03905 459 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 GLAP06280 429 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 CCL3L1P16619 93 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 ELK1P19419 428 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 BLVRBP30043 206 aaPredicted RBP7.63□□□□□ -1.19
VPS35-211ENST00000569950 RORCP51449 518 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 C17orf58Q2M2W7 97 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 TUSC1Q2TAM9 212 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 PAN3Q58A45 887 aaKnown RBP7.63□□□□□ -1.19
VPS35-211ENST00000569950 LRRC10Q5BKY1 277 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 KLF17Q5JT82 389 aaPredicted RBP7.63□□□□□ -1.19
VPS35-211ENST00000569950 CYB5R2Q6BCY4 276 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 HCP5Q6MZN7 132 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 ZNF880Q6PDB4 577 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 FIP1L1Q6UN15 594 aaKnown RBP7.63□□□□□ -1.19
VPS35-211ENST00000569950 OR13A1Q8NGR1 328 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 OR10R2Q8NGX6 335 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 MRPL30Q8TCC3 161 aaKnown RBP7.63□□□□□ -1.19
VPS35-211ENST00000569950 CORO2AQ92828 525 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 TBX15Q96SF7 602 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 FAAP24Q9BTP7 215 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 NCOR1P1Q9H4R4 102 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 LINC00574Q9H8X3 128 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 PCDHB16Q9NRJ7 776 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 HIF1ANQ9NWT6 349 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 KIF25Q9UIL4 384 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 PEX16Q9Y5Y5 336 aa7.63□□□□□ -1.19
VPS35-211ENST00000569950 ODAMA1E959 279 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 UBE2QL1A1L167 161 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 C17orf98A8MV24 154 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 C15orf65H3BRN8 121 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 SSX5O60225 188 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 HPGDSO60760 199 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 ECDO95905 644 aaPredicted RBP7.62□□□□□ -1.19
VPS35-211ENST00000569950 TGFAP01135 160 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 PTHLHP12272 177 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 HIST1H1DP16402 221 aaKnown RBP7.62□□□□□ -1.19
VPS35-211ENST00000569950 NDUFB7P17568 137 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 254.5 ms