RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CD33P20138 364 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 MRPL28Q13084 256 aaKnown RBP12.82□□□□□ -0.36
CLN3-229ENST00000567963 ZNF691Q5VV52 312 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 ELP2Q6IA86 826 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 ZNF565Q8N9K5 539 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 PXT1Q8NFP0 134 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 MRAPQ8TCY5 172 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 KIRREL1Q96J84 757 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 Q96MT0 163 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 INPP5EQ9NRR6 644 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 DHDHQ9UQ10 334 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 OOSP1A8MZH6 123 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 NFYBP25208 207 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 MNDAP41218 407 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 OR3A4PP47883 348 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 LOXL3P58215 753 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 RAB40BQ12829 278 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 RBM39Q14498 530 aaKnown RBP12.81□□□□□ -0.36
CLN3-229ENST00000567963 FOXB2Q5VYV0 432 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 CCDC144NLQ6NUI1 221 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 OR9G1Q8NH87 305 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 NR1H4Q96RI1 486 aaPredicted RBP12.81□□□□□ -0.36
CLN3-229ENST00000567963 NCOR1P1Q9H4R4 102 aa12.81□□□□□ -0.36
CLN3-229ENST00000567963 AURKAIP1Q9NWT8 199 aaPredicted RBP12.81□□□□□ -0.36
CLN3-229ENST00000567963 TSSC4Q9Y5U2 329 aaPredicted RBP12.81□□□□□ -0.36
CLN3-229ENST00000567963 TRAV24A0A0B4J272 114 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 TCRBV4S1A1TA0A5B7 111 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 HSPB6O14558 160 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 CCDC159P0C7I6 412 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 PF4V1P10720 104 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 IGLL1P15814 213 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 GBX2P52951 348 aaPredicted RBP12.8□□□□□ -0.36
CLN3-229ENST00000567963 ZNF529Q6P280 563 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 CNIH3Q8TBE1 160 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 TSEN15Q8WW01 171 aaKnown RBP12.8□□□□□ -0.36
CLN3-229ENST00000567963 MYDGFQ969H8 173 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 BARHL1Q9BZE3 327 aa12.8□□□□□ -0.36
CLN3-229ENST00000567963 MRPS18AQ9NVS2 196 aaKnown RBP12.8□□□□□ -0.36
CLN3-229ENST00000567963 MEIKINA0A087WXM9 373 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 LOC100130705A0A1B0GUX0 176 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A18PA6NE21 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A16PA6NEW6 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A20PA6NIJ5 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 SH2D7A6NKC9 451 aaPredicted RBP12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A9PA6NNJ1 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A12PA8MX19 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A5PA8MXJ8 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 M0QZK8 103 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 MAGEB3O15480 346 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A15PP0C7V4 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A13PP0C7W8 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A14PP0C7W9 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM90A24PP0C7X0 464 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 FAM106CPP0CH98 169 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 RAB3AP20336 220 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 C21orf33P30042 268 aaPredicted RBP12.79□□□□□ -0.36
CLN3-229ENST00000567963 GLP1RP43220 463 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 PAN3Q58A45 887 aaKnown RBP12.79□□□□□ -0.36
CLN3-229ENST00000567963 LPCAT4Q643R3 524 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 C10orf99Q6UWK7 81 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 SATL1Q86VE3 508 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 THNSL2Q86YJ6 484 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 Q8NFD4 153 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 OR4X2Q8NGF9 303 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 OR52I1Q8NGK6 324 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 OR13A1Q8NGR1 328 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 HAVCR2Q8TDQ0 301 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 CPNE2Q96FN4 548 aaPredicted RBP12.79□□□□□ -0.36
CLN3-229ENST00000567963 GPER1Q99527 375 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 SLC29A1Q99808 456 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 C9orf16Q9BUW7 83 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 LINC00574Q9H8X3 128 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 CALYQ9NYX4 217 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 KIF25Q9UIL4 384 aa12.79□□□□□ -0.36
CLN3-229ENST00000567963 RPL36Q9Y3U8 105 aaKnown RBP12.79□□□□□ -0.36
CLN3-229ENST00000567963 J3QR06 171 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 GABRPO00591 440 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 GTF2A1P52655 376 aaPredicted RBP12.78□□□□□ -0.36
CLN3-229ENST00000567963 PAX5Q02548 391 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 IL13RA2Q14627 380 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 KLHL22Q53GT1 634 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 OR51A2Q8NGJ7 313 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 TNFAIP8L1Q8WVP5 186 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 RPEQ96AT9 228 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 PCDHB16Q9NRJ7 776 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 FAM118AQ9NWS6 357 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 IDI2-AS1Q9NZ38 188 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 AMMECR1Q9Y4X0 333 aaPredicted RBP12.78□□□□□ -0.36
CLN3-229ENST00000567963 NPIPB11E5RHQ5 1161 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 IL1AP01583 271 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 IGHV3-7P01780 117 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 PF4P02776 101 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 RSU1Q15404 277 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 PIGYQ3MUY2 71 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 C9orf152Q5JTZ5 239 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 RSBN1Q5VWQ0 802 aaPredicted RBP12.78□□□□□ -0.36
CLN3-229ENST00000567963 ASCL4Q6XD76 172 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 C10orf67Q8IYJ2 551 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 OR10K1Q8NGX5 313 aa12.78□□□□□ -0.36
CLN3-229ENST00000567963 APH1BQ8WW43 257 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms