RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 P2RX3P56373 397 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 DEFA6Q01524 100 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 AESQ08117 197 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 TMEM200BQ69YZ2 307 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 BPIFB2Q8N4F0 458 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 TMEM104Q8NE00 496 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 C1orf147Q96MC9 270 aaPredicted RBP14.16□□□□□ -0.14
CLN3-217ENST00000565354 TBX15Q96SF7 602 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 GFI1Q99684 422 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 ZNF747Q9BV97 191 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 DPCDQ9BVM2 203 aaPredicted RBP14.16□□□□□ -0.14
CLN3-217ENST00000565354 SUCNR1Q9BXA5 334 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 TMEM59Q9BXS4 323 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 BARHL1Q9BZE3 327 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 SPACA1Q9HBV2 294 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 SIRT7Q9NRC8 400 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 STEAP1Q9UHE8 339 aa14.16□□□□□ -0.14
CLN3-217ENST00000565354 CMYA5Q8N3K9 4069 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 NOTCH1P46531 2555 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 TRAV24A0A0B4J272 114 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 MEX3AA1L020 520 aaKnown RBP14.15□□□□□ -0.14
CLN3-217ENST00000565354 H3BUI4 141 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 CSN2P05814 226 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 IGHV4-38-2P0DP08 117 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 VSIG8P0DPA2 414 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 CCL3L1P16619 93 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 KCNJ3P48549 501 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 OR10A3P58181 314 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 ZNF273Q14593 569 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 OR10K2Q6IF99 312 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 SHISA2Q6UWI4 295 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 TPRA1Q86W33 373 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 SUMF2Q8NBJ7 301 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 OR51D1Q8NGF3 324 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 ZNF714Q96N38 554 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 URM1Q9BTM9 101 aaKnown RBP14.15□□□□□ -0.14
CLN3-217ENST00000565354 IFT22Q9H7X7 185 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 METTL8Q9H825 291 aaKnown RBP14.15□□□□□ -0.14
CLN3-217ENST00000565354 LINC00312Q9Y6C7 94 aa14.15□□□□□ -0.14
CLN3-217ENST00000565354 PRKDCP78527 4128 aaKnown RBP14.14□□□□□ -0.15
CLN3-217ENST00000565354 TRGV10A0A0A0MS01 117 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 SHISA3A0PJX4 238 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 SMIM30A4D0T7 59 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A10PA6NDY2 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A18PA6NE21 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A16PA6NEW6 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A20PA6NIJ5 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A8PA6NJQ4 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A7PA6NKC0 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A22PA8MWA6 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A12PA8MX19 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A5PA8MXJ8 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A23PA8MXZ1 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 MCRIP1C9JLW8 97 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 AIREO43918 545 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FSHBP01225 129 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A15PP0C7V4 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A13PP0C7W8 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A14PP0C7W9 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 FAM90A24PP0C7X0 464 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 SMIM18P0DKX4 95 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 GLIPR1P48060 266 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 CLDN12P56749 244 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 RBM39Q14498 530 aaKnown RBP14.14□□□□□ -0.15
CLN3-217ENST00000565354 KLF17Q5JT82 389 aaPredicted RBP14.14□□□□□ -0.15
CLN3-217ENST00000565354 NCR3LG1Q68D85 454 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 METAP1DQ6UB28 335 aaPredicted RBP14.14□□□□□ -0.15
CLN3-217ENST00000565354 GDPGP1Q6ZNW5 385 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 C1orf122Q6ZSJ8 110 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 OR2W3Q7Z3T1 314 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 PDZD9Q8IXQ8 264 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 C22orf15Q8WYQ4 148 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 YIPF6Q96EC8 236 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 Q96M66 194 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 NEDD4LQ96PU5 975 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 SLC6A7Q99884 636 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 KCNK15Q9H427 330 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 ESM1Q9NQ30 184 aa14.14□□□□□ -0.15
CLN3-217ENST00000565354 MEIKINA0A087WXM9 373 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 ODAMA1E959 279 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 IFITM5A6NNB3 132 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 ZNF728P0DKX0 622 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 CD37P11049 281 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 ERVFRD-1P60508 538 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 RPS27AP62979 156 aaKnown RBP14.13□□□□□ -0.15
CLN3-217ENST00000565354 GUCA2AQ02747 115 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 MXD1Q05195 221 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 NKAPLQ5M9Q1 402 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 RAB12Q6IQ22 244 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 Q8N7P7 452 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 ZDHHC22Q8N966 263 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 SLC25A28Q96A46 364 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 FAM3DQ96BQ1 224 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 CENPOQ9BU64 300 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 GAL3ST2Q9H3Q3 398 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 OR6C3Q9NZP0 311 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 ZNF581Q9P0T4 197 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 UBE2J1Q9Y385 318 aaPredicted RBP14.13□□□□□ -0.15
CLN3-217ENST00000565354 PEX16Q9Y5Y5 336 aa14.13□□□□□ -0.15
CLN3-217ENST00000565354 NOTOA8MTQ0 251 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms