RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 MGST3O14880 152 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 MAGEB3O15480 346 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 CYB5AP00167 134 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 SLC2A2P11168 524 aaPredicted RBP7.5□□□□□ -1.21
VPS35-206ENST00000565228 MGMTP16455 207 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 OMGP23515 440 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 HTR2CP28335 458 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 ERP29P30040 261 aaKnown RBP7.5□□□□□ -1.21
VPS35-206ENST00000565228 EFNB2P52799 333 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 HILS1P60008 231 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 HES5Q5TA89 166 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 PRAMEF5Q5TYX0 476 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 AWAT2Q6E213 333 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 LHFPL4Q7Z7J7 247 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 CDH26Q8IXH8 852 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 SVOPQ8N4V2 548 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.5□□□□□ -1.21
VPS35-206ENST00000565228 UBALD1Q8TB05 177 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 UQCC2Q9BRT2 126 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 CENPOQ9BU64 300 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 IFT22Q9H7X7 185 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 RHOFQ9HBH0 211 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 TCF7L1Q9HCS4 588 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 KIF25Q9UIL4 384 aa7.5□□□□□ -1.21
VPS35-206ENST00000565228 TENM1Q9UKZ4 2725 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 ODAMA1E959 279 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 DNAJC9-AS1A6NH13 148 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 ODF3BA8MYP8 253 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 SLC17A2O00624 439 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 MPIG6BO95866 241 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 CSN2P05814 226 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 ZNF728P0DKX0 622 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 IGHV1-8P0DP01 117 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 COX7A1P24310 79 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 MAPK3P27361 379 aaPredicted RBP7.49□□□□□ -1.21
VPS35-206ENST00000565228 TMEM50BP56557 158 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 SLC9A3R2Q15599 337 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 MOGAT2Q3SYC2 334 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 PAN3Q58A45 887 aaKnown RBP7.49□□□□□ -1.21
VPS35-206ENST00000565228 OLFML2AQ68BL7 652 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 C1orf122Q6ZSJ8 110 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 NKAIN3Q8N8D7 197 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 TSPAN14Q8NG11 270 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 CORO2AQ92828 525 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 FOXRED1Q96CU9 486 aaPredicted RBP7.49□□□□□ -1.21
VPS35-206ENST00000565228 DMRTB1Q96MA1 342 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 SULT4A1Q9BR01 284 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 DPCDQ9BVM2 203 aaPredicted RBP7.49□□□□□ -1.21
VPS35-206ENST00000565228 SELENOIQ9C0D9 397 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 NAA50Q9GZZ1 169 aaKnown RBP7.49□□□□□ -1.21
VPS35-206ENST00000565228 LPAR5Q9H1C0 372 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 CKLFQ9UBR5 152 aa7.49□□□□□ -1.21
VPS35-206ENST00000565228 TRRAPQ9Y4A5 3859 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 TRAV1-2A0A0B4J238 106 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 TMEM272A0A1B0GTI8 110 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 C15orf65H3BRN8 121 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 NPFFO15130 113 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 SOCS1O15524 211 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 HOXA3O43365 443 aaPredicted RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 CRTAPO75718 401 aaPredicted RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 OR7C1O76099 320 aaPredicted RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 IGHV4-59P01825 116 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 MELTFP08582 738 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 GTF2F2P13984 249 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 PSMA1P25786 263 aaKnown RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 CHATP28329 748 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 FGF9P31371 208 aaPredicted RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 SSTR5P35346 364 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 SAA4P35542 130 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 RPS27AP62979 156 aaKnown RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 UBA52P62987 128 aaKnown RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 PAX5Q02548 391 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 TRAM1Q15629 374 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 KRBOX4Q5JUW0 171 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 Q6YL49 198 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 GDPD3Q7L5L3 318 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 GAPTQ8N292 157 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 CHST4Q8NCG5 386 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 OR51D1Q8NGF3 324 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 OR5D13Q8NGL4 314 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 PIFOQ8TCI5 191 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 FCGR1BQ92637 280 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 LEAP2Q969E1 77 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 CHCHD6Q9BRQ6 235 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 TM2D1Q9BX74 207 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 MS4A7Q9GZW8 240 aaPredicted RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 METTL8Q9H825 291 aaKnown RBP7.48□□□□□ -1.21
VPS35-206ENST00000565228 ZNF286AQ9HBT8 521 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 STUB1Q9UNE7 303 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 KCNK7Q9Y2U2 307 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 LINC00312Q9Y6C7 94 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 V9GY05 133 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 MEGF8Q7Z7M0 2845 aa7.48□□□□□ -1.21
VPS35-206ENST00000565228 UBE2QL1A1L167 161 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 FAM90A8PA6NJQ4 464 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 NPIPB11E5RHQ5 1161 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 TCF21O43680 179 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 TNFAIP8O95379 198 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 IGHV3-7P01780 117 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 MT-ND4P03905 459 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms