RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TMED9Q9BVK6 235 aa10.9□□□□□ -0.66
CLK3-213ENST00000563842 IFT22Q9H7X7 185 aa10.9□□□□□ -0.66
CLK3-213ENST00000563842 BEX1Q9HBH7 125 aa10.9□□□□□ -0.66
CLK3-213ENST00000563842 GHRLQ9UBU3 117 aa10.9□□□□□ -0.66
CLK3-213ENST00000563842 VPREB3Q9UKI3 123 aa10.9□□□□□ -0.66
CLK3-213ENST00000563842 MRPS28Q9Y2Q9 187 aaKnown RBP10.9□□□□□ -0.66
CLK3-213ENST00000563842 MMP24Q9Y5R2 645 aa10.9□□□□□ -0.66
CLK3-213ENST00000563842 MEX3AA1L020 520 aaKnown RBP10.89□□□□□ -0.67
CLK3-213ENST00000563842 ZNF729A6NN14 1252 aaPredicted RBP10.89□□□□□ -0.67
CLK3-213ENST00000563842 H3BUI4 141 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 GPR137BO60478 399 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 OR7C1O76099 320 aaPredicted RBP10.89□□□□□ -0.67
CLK3-213ENST00000563842 NDUFA7O95182 113 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 PSMA1P25786 263 aaKnown RBP10.89□□□□□ -0.67
CLK3-213ENST00000563842 RAG2P55895 527 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 PAX5Q02548 391 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 DYNC1I2Q13409 638 aaKnown RBP10.89□□□□□ -0.67
CLK3-213ENST00000563842 ATXN7L3Q14CW9 347 aaPredicted RBP10.89□□□□□ -0.67
CLK3-213ENST00000563842 LRRC75BQ2VPJ9 315 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 PIGYQ3MUY2 71 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 SLC22A6Q4U2R8 563 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 MINOS1Q5TGZ0 78 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 ZNF626Q68DY1 528 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 HEPN1Q6WQI6 88 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 RTN4RL2Q86UN3 420 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 DTX3Q8N9I9 347 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 OR4D6Q8NGJ1 314 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 PHYHIPQ92561 330 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 MUL1Q969V5 352 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 MALSU1Q96EH3 234 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 SSX3Q99909 188 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 ZNF747Q9BV97 191 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 CLEC7AQ9BXN2 247 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 SLITRK2Q9H156 845 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 TMEM133Q9H2Q1 129 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 SPACA1Q9HBV2 294 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 MINOS1-NBL1R4GNA1 71 aa10.89□□□□□ -0.67
CLK3-213ENST00000563842 TENM1Q9UKZ4 2725 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 TRAV24A0A0B4J272 114 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A8PA6NJQ4 464 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 ODF3BA8MYP8 253 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 H3BUX3 64 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 HSPB6O14558 160 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 PIN1P1O15428 100 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 HSMCR30P0CW71 290 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 CDK2P24941 298 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 RANBP1P43487 201 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 MLLT11Q13015 90 aaPredicted RBP10.88□□□□□ -0.67
CLK3-213ENST00000563842 TPBGQ13641 420 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 TAF9Q16594 264 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 LIPKQ5VXJ0 399 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 GLT8D1Q68CQ7 371 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 AWAT2Q6E213 333 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 DHRS7BQ6IAN0 325 aaPredicted RBP10.88□□□□□ -0.67
CLK3-213ENST00000563842 GLIPR1L1Q6UWM5 242 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 CEACAM19Q7Z692 300 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 ZNF596Q8TC21 504 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 SGCDQ92629 289 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 COQ2Q96H96 371 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 NKX3-1Q99801 234 aaPredicted RBP10.88□□□□□ -0.67
CLK3-213ENST00000563842 DPCDQ9BVM2 203 aaPredicted RBP10.88□□□□□ -0.67
CLK3-213ENST00000563842 RAB18Q9NP72 206 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 ING3Q9NXR8 418 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 C1RLQ9NZP8 487 aa10.88□□□□□ -0.67
CLK3-213ENST00000563842 MEIKINA0A087WXM9 373 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 IGHV2-26A0A0B4J1V2 119 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 MAGEA13PA6NCF6 341 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A10PA6NDY2 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A18PA6NE21 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A16PA6NEW6 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A20PA6NIJ5 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A7PA6NKC0 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A22PA8MWA6 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A12PA8MX19 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A5PA8MXJ8 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A23PA8MXZ1 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 GEMIN2O14893 280 aaKnown RBP10.87□□□□□ -0.67
CLK3-213ENST00000563842 MRPS14O60783 128 aaKnown RBP10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A15PP0C7V4 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A13PP0C7W8 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A14PP0C7W9 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 FAM90A24PP0C7X0 464 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 UBBP0CG47 229 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 CPEP16870 476 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 SRMP19623 302 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 RBM39Q14498 530 aaKnown RBP10.87□□□□□ -0.67
CLK3-213ENST00000563842 TBCEQ15813 527 aaPredicted RBP10.87□□□□□ -0.67
CLK3-213ENST00000563842 HSD17B12Q53GQ0 312 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 ATAD3CQ5T2N8 411 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 SHISA2Q6UWI4 295 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 LIAT1Q6ZQX7 453 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 SUMF2Q8NBJ7 301 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 NDNFQ8TB73 568 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 CREB3L1Q96BA8 519 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 MGLLQ99685 303 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 CST11Q9H112 138 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 ABCB10Q9NRK6 738 aa10.87□□□□□ -0.67
CLK3-213ENST00000563842 KBTBD11-OT1A0A1B0GTJ5 212 aa10.86□□□□□ -0.67
CLK3-213ENST00000563842 CLPSL1A2RUU4 121 aa10.86□□□□□ -0.67
CLK3-213ENST00000563842 VGLL3A8MV65 326 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms