RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 LRRC58Q96CX6 371 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 NUS1Q96E22 293 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CPNE2Q96FN4 548 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 ITCHQ96J02 903 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 C4orf45Q96LM5 186 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PANX1Q96RD7 426 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 MBOAT4Q96T53 435 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 HIST1H2BLQ99880 126 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TBL1YQ9BQ87 522 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SUCNR1Q9BXA5 334 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 GABARAPL3Q9BY60 117 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TMEM126AQ9H061 195 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 OR52D1Q9H346 318 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 LYRM4Q9HD34 91 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PARP11Q9NR21 331 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TUBG2Q9NRH3 451 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 NDUFB11Q9NX14 153 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 GPR83Q9NYM4 423 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 AHSPQ9NZD4 102 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ONECUT1Q9UBC0 465 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 RPS6KB2Q9UBS0 482 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CLN8Q9UBY8 286 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 CACFD1Q9UGQ2 172 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ZNF230Q9UIE0 474 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 TBX21Q9UL17 535 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 ZNF346Q9UL40 294 aaKnown RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 RNF150Q9ULK6 438 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 NIP7Q9Y221 180 aaKnown RBP eCLIP2.84□□□□□ -1.95
VPS35-203ENST00000562420 WDR83OSQ9Y284 106 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SIGLEC7Q9Y286 467 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 COQ4Q9Y3A0 265 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 MICAL3Q7RTP6 2002 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 COL14A1Q05707 1796 aaKnown RBP2.84□□□□□ -1.96
VPS35-203ENST00000562420 ANKRD36CQ5JPF3 1778 aa2.84□□□□□ -1.96
VPS35-203ENST00000562420 TANC1Q9C0D5 1861 aa2.84□□□□□ -1.96
VPS35-203ENST00000562420 NOTCH3Q9UM47 2321 aa2.84□□□□□ -1.96
VPS35-203ENST00000562420 PLCH1Q4KWH8 1693 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 PKD1L3Q7Z443 1732 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 NWD2Q9ULI1 1742 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 A0A0A6YYC8 382 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 TRAV24A0A0B4J272 114 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 A0A0B4J2A0 478 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TRDV1A0A1B0GX56 115 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 A0A1W2PPK0 400 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TMEM129A0AVI4 362 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CASTOR2A6NHX0 329 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR5B21A6NL26 309 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 OR2AG2A6NM03 316 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 IDSB3KWA1 339 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CLDN34H7C241 214 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 I3L1I5 382 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 GABRPO00591 440 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CYB561D2O14569 222 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 RFXANKO14593 260 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 P2RX6O15547 441 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 ZNF207O43670 478 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 MFSD11O43934 449 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BKO60814 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 PROSCO94903 275 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 UBL3O95164 117 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 FARS2O95363 451 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 OPN1SWP03999 348 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HLA-DPB1P04440 258 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 ARG1P05089 322 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BJP06899 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 FCGR3AP08637 254 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 PSG2P11465 335 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 GP9P14770 177 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H1DP16402 221 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H1CP16403 213 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 IDSP22304 550 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BOP23527 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 CXCR1P25024 350 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 ATP6V0CP27449 155 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HTR1DP28221 377 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BBP33778 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 BDKRB1P46663 353 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 DUSP3P51452 185 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 ZNF140P52738 457 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 PAX9P55771 341 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BDP58876 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 LCN6P62502 163 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST1H2BCP62807 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 RPS28P62857 69 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 POLR2LP62875 67 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 HERV-K104P63124 156 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 ZFP36L1Q07352 338 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 EIF2B1Q14232 305 aaKnown RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 PMVKQ15126 192 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SPHARQ15513 63 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 EXT1Q16394 746 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SYPL1Q16563 259 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST2H2BEQ16778 126 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 ACOT6Q3I5F7 207 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 LRRC10Q5BKY1 277 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 TFDP3Q5H9I0 405 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.83□□□□□ -1.96
VPS35-203ENST00000562420 BCL2L15Q5TBC7 163 aa2.83□□□□□ -1.96
VPS35-203ENST00000562420 SLC8B1Q6J4K2 584 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms