RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NPY4RP50391 375 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 UBA52P62987 128 aaKnown RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 NKX6-1P78426 367 aaPredicted RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 CD300CQ08708 224 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 FOXF2Q12947 444 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 TESK1Q15569 626 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 IGFBP7Q16270 282 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 AADACL3Q5VUY0 350 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 ZNF660Q6AZW8 331 aaPredicted RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 CLEC18BQ6UXF7 455 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 SUMF2Q8NBJ7 301 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 SCCPDHQ8NBX0 429 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 OR5T2Q8NGG2 359 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 RTN4IP1Q8WWV3 396 aaPredicted RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 EDARADDQ8WWZ3 215 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 C2orf50Q96LR7 162 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 RSRP1Q9BUV0 290 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 FAM234AQ9H0X4 552 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 WDR13Q9H1Z4 485 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 NAA60Q9H7X0 242 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 METTL8Q9H825 291 aaKnown RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 MBNL3Q9NUK0 354 aaKnown RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 LIN7CQ9NUP9 197 aaKnown RBP6.4□□□□□ -1.38
VPS39-204ENST00000561818 POU2F3Q9UKI9 436 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 TRAPPC2LQ9UL33 140 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 WIPI2Q9Y4P8 454 aa6.4□□□□□ -1.38
VPS39-204ENST00000561818 DMDP11532 3685 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 C1QTNF9BB2RNN3 333 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 TUSC2O75896 110 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 TOXO94900 526 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 HAND1O96004 215 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 PDGFAP04085 211 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 CD55P08174 381 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 PVALBP20472 110 aaPredicted RBP6.39□□□□□ -1.39
VPS39-204ENST00000561818 GZMHP20718 246 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 BMP5P22003 454 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 GLRA1P23415 457 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 CD40P25942 277 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 FCGR2CP31995 323 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 NPBWR2P48146 333 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 PIGPP57054 158 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 THOC7Q6I9Y2 204 aaKnown RBP6.39□□□□□ -1.39
VPS39-204ENST00000561818 ZNF474Q6S9Z5 364 aaPredicted RBP6.39□□□□□ -1.39
VPS39-204ENST00000561818 TEX261Q6UWH6 196 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 ZNF497Q6ZNH5 498 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 ACOT7LQ6ZUV0 252 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 ZNF546Q86UE3 836 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 CISD2Q8N5K1 135 aaKnown RBP6.39□□□□□ -1.39
VPS39-204ENST00000561818 Q8NA96 180 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 Q8TCH9 128 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 CASTOR1Q8WTX7 329 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 MRPL24Q96A35 216 aaKnown RBP6.39□□□□□ -1.39
VPS39-204ENST00000561818 GALMQ96C23 342 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 RAB39BQ96DA2 213 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 SNRNP40Q96DI7 357 aaKnown RBP6.39□□□□□ -1.39
VPS39-204ENST00000561818 ELMOD3Q96FG2 381 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 LURAP1Q96LR2 239 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 CHIAQ9BZP6 476 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 MFFQ9GZY8 342 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 TOLLIPQ9H0E2 274 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 BEX1Q9HBH7 125 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 TMEM165Q9HC07 324 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 SLC2A9Q9NRM0 540 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 OR6C3Q9NZP0 311 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 OR2W1Q9Y3N9 320 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 U3KQ87 197 aa6.39□□□□□ -1.39
VPS39-204ENST00000561818 FREM1Q5H8C1 2179 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 FXYD6-FXYD2A0A087WZ82 144 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 TRBV6-7A0A0A0MS04 114 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 hCG_1807616A0A1W2PRN6 198 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 SRRM5B3KS81 715 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 H0Y980 276 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 SLC33A1O00400 549 aaPredicted RBP6.38□□□□□ -1.39
VPS39-204ENST00000561818 CDIPTO14735 213 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 MGST3O14880 152 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 SPINT2O43291 252 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 HSPA12AO43301 675 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 SYNGR1O43759 233 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 FSTL3O95633 263 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 OR2H2O95918 312 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 CELA3BP08861 270 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 LYL1P12980 280 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 MMP9P14780 707 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 MUC1P15941 1255 aaPredicted RBP6.38□□□□□ -1.39
VPS39-204ENST00000561818 ANOS1P23352 680 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 DUSP1P28562 367 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 CA7P43166 264 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 ZNF83P51522 516 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 LUMP51884 338 aaPredicted RBP6.38□□□□□ -1.39
VPS39-204ENST00000561818 ARHGDIBP52566 201 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 NKX2-5P52952 324 aaPredicted RBP6.38□□□□□ -1.39
VPS39-204ENST00000561818 H2BFSP57053 126 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 CATR1Q13166 79 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 SPATA46Q5T0L3 261 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 ACP7Q6ZNF0 438 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 LIAT1Q6ZQX7 453 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 FAM219AQ8IW50 185 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 ZNF561Q8N587 486 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 FAM71E2Q8N5Q1 922 aa6.38□□□□□ -1.39
VPS39-204ENST00000561818 BVESQ8NE79 360 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms