RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SERPINA2P20848 420 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 AQP4P55087 323 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 IL13RA2Q14627 380 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 OR52W1Q6IF63 320 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 HEPN1Q6WQI6 88 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 ABHD12Q8N2K0 398 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 OR4D6Q8NGJ1 314 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 RAB18Q9NP72 206 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 FKBP14Q9NWM8 211 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 ZNF581Q9P0T4 197 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 KIF25Q9UIL4 384 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 ST3GAL6Q9Y274 331 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 ERGIC3Q9Y282 383 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 MEIKINA0A087WXM9 373 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 TRBV5-7A0A0A0MS05 114 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 ZNF729A6NN14 1252 aaPredicted RBP12.64□□□□□ -0.39
VPS39-203ENST00000561797 VGLL3A8MV65 326 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 GPX5O75715 221 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 MAS1P04201 325 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 CDK1P06493 297 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 NFYBP25208 207 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 HTR1DP28221 377 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 GABRA5P31644 462 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 GLP1RP43220 463 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 C6orf141Q5SZD1 244 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 MINOS1Q5TGZ0 78 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 CCBE1Q6UXH8 406 aaPredicted RBP12.64□□□□□ -0.39
VPS39-203ENST00000561797 TREML4Q6UXN2 200 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 TMEM219Q86XT9 240 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 OSR2Q8N2R0 312 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 Q8NFD4 153 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 OR4C13Q8NGP0 309 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 PLPPR1Q8TBJ4 325 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 BARHL1Q9BZE3 327 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 TCF7L1Q9HCS4 588 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 IL36GQ9NZH8 169 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 OR6C3Q9NZP0 311 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 FBLN5Q9UBX5 448 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 TCF19Q9Y242 345 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 MINOS1-NBL1R4GNA1 71 aa12.64□□□□□ -0.39
VPS39-203ENST00000561797 A0A1W2PP11 408 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 OR7C1O76099 320 aaPredicted RBP12.63□□□□□ -0.39
VPS39-203ENST00000561797 FSTP19883 344 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 RBM11P57052 281 aaKnown RBP12.63□□□□□ -0.39
VPS39-203ENST00000561797 GABPB1Q06547 395 aaPredicted RBP12.63□□□□□ -0.39
VPS39-203ENST00000561797 C17orf58Q2M2W7 97 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 SLC22A6Q4U2R8 563 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 LIAT1Q6ZQX7 453 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 RTN4RL2Q86UN3 420 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 JAGN1Q8N5M9 183 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 SUMF2Q8NBJ7 301 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 OR4P4Q8NGL7 312 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 OR13A1Q8NGR1 328 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 MYDGFQ969H8 173 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 MUL1Q969V5 352 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 DERL3Q96Q80 235 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 ZNF286AQ9HBT8 521 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 PAK1IP1Q9NWT1 392 aaPredicted RBP12.63□□□□□ -0.39
VPS39-203ENST00000561797 SCN3BQ9NY72 215 aa12.63□□□□□ -0.39
VPS39-203ENST00000561797 MRPS28Q9Y2Q9 187 aaKnown RBP12.63□□□□□ -0.39
VPS39-203ENST00000561797 TRAV39A0A0B4J263 110 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 MEGF11A6BM72 1044 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 A6NDX4 124 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 F2RL2O00254 374 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 TOR1AO14656 332 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 GEMIN2O14893 280 aaKnown RBP12.62□□□□□ -0.39
VPS39-203ENST00000561797 PIN1P1O15428 100 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 KIR2DS4P43632 304 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 UTF1Q5T230 341 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 ATAD3CQ5T2N8 411 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 RSBN1Q5VWQ0 802 aaPredicted RBP12.62□□□□□ -0.39
VPS39-203ENST00000561797 ZNF565Q8N9K5 539 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 OR2T6Q8NHC8 308 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 ZNF596Q8TC21 504 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 SGCDQ92629 289 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 DPCDQ9BVM2 203 aaPredicted RBP12.62□□□□□ -0.39
VPS39-203ENST00000561797 MND1Q9BWT6 205 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 NPFFR1Q9GZQ6 430 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 PCDHB16Q9NRJ7 776 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 DPM3Q9P2X0 92 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 FOXJ3Q9UPW0 622 aa12.62□□□□□ -0.39
VPS39-203ENST00000561797 KBTBD11-OT1A0A1B0GTJ5 212 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 TIMM23O14925 209 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 IGHV3-7P01780 117 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 CD1AP06126 327 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 CGB3P0DN86 165 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 CGB7P0DN87 165 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 CD34P28906 385 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 PRRX1P54821 245 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 BDH1Q02338 343 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 RBM39Q14498 530 aaKnown RBP12.61□□□□□ -0.39
VPS39-203ENST00000561797 LTC4SQ16873 150 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 NHLRC3Q5JS37 347 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 GLIPR1L1Q6UWM5 242 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 RFESDQ8TAC1 157 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 MRGPRDQ8TDS7 321 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 KIRREL1Q96J84 757 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 OR5M11Q96RB7 305 aa12.61□□□□□ -0.39
VPS39-203ENST00000561797 RANBP3Q9H6Z4 567 aaPredicted RBP12.61□□□□□ -0.39
VPS39-203ENST00000561797 CALYQ9NYX4 217 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms