RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 COQ2Q96H96 371 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 Q96M66 194 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 JMJD8Q96S16 334 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 GFI1Q99684 422 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 DPCDQ9BVM2 203 aaPredicted RBP10.67□□□□□ -0.7
NEDD8-208ENST00000560427 TMEM59Q9BXS4 323 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 GAL3ST2Q9H3Q3 398 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 SIRT7Q9NRC8 400 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 TXNL4BQ9NX01 149 aaKnown RBP10.67□□□□□ -0.7
NEDD8-208ENST00000560427 TAS2R3Q9NYW6 316 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 FBLN5Q9UBX5 448 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 AK6Q9Y3D8 172 aaKnown RBP10.67□□□□□ -0.7
NEDD8-208ENST00000560427 JMJD1CQ15652 2540 aa10.67□□□□□ -0.7
NEDD8-208ENST00000560427 TMEM14DPA8MWL7 114 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 CA11O75493 328 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 RAB3BP20337 219 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 UBE2E1P51965 193 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 DLX6P56179 175 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 AESQ08117 197 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 ATXN7L3Q14CW9 347 aaPredicted RBP10.66□□□□□ -0.7
NEDD8-208ENST00000560427 RBMS3Q6XE24 437 aaKnown RBP10.66□□□□□ -0.7
NEDD8-208ENST00000560427 LHX4Q969G2 390 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 SLC25A28Q96A46 364 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 KCTD7Q96MP8 289 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 URM1Q9BTM9 101 aaKnown RBP10.66□□□□□ -0.7
NEDD8-208ENST00000560427 TM2D1Q9BX74 207 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 SELENOIQ9C0D9 397 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 OCEL1Q9H607 264 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 HEXA-AS1Q9H8Q6 139 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 ZNF69Q9UC07 566 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 STEAP1Q9UHE8 339 aa10.66□□□□□ -0.7
NEDD8-208ENST00000560427 SHISA3A0PJX4 238 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 IFITM5A6NNB3 132 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 RNASEK-C17orf49H0YIS7 233 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 AIPO00170 330 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 HSPB6O14558 160 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 PDCD6O75340 191 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 CLPXO76031 633 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 MPIG6BO95866 241 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 CCL3L1P16619 93 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 HILS1P60008 231 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 RPS27AP62979 156 aaKnown RBP10.65□□□□□ -0.7
NEDD8-208ENST00000560427 QRFPP83859 136 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 FAM189A2Q15884 450 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 ATAD3CQ5T2N8 411 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 RSBN1Q5VWQ0 802 aaPredicted RBP10.65□□□□□ -0.7
NEDD8-208ENST00000560427 SLC35E4Q6ICL7 350 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 TRAPPC6BQ86SZ2 158 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 C11orf42Q8N5U0 333 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 TPRX1Q8N7U7 411 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 FAM46BQ96A09 425 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 SLC6A7Q99884 636 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 OR51E2Q9H255 320 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 PRDM13Q9H4Q3 707 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 BANF2Q9H503 90 aa10.65□□□□□ -0.7
NEDD8-208ENST00000560427 MEIKINA0A087WXM9 373 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 TMEM30CPA0ZSE6 113 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF729A6NN14 1252 aaPredicted RBP10.64□□□□□ -0.71
NEDD8-208ENST00000560427 NOTOA8MTQ0 251 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 MCRIP1C9JLW8 97 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 TMEM127O75204 238 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 IGHV1-8P0DP01 117 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 FUT3P21217 361 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 GADD45AP24522 165 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 GLIPR1P48060 266 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 UNC119Q13432 240 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 MIDNQ504T8 468 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 OR52W1Q6IF63 320 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 RAB12Q6IQ22 244 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 BRD3OSQ6XYD6 125 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF565Q8N9K5 539 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 ZFAND2BQ8WV99 257 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 FAM3DQ96BQ1 224 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 YIPF6Q96EC8 236 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 NEDD4LQ96PU5 975 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 CHCHD6Q9BRQ6 235 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 MRPS26Q9BYN8 205 aaKnown RBP10.64□□□□□ -0.71
NEDD8-208ENST00000560427 ZMAT3Q9HA38 289 aaKnown RBP10.64□□□□□ -0.71
NEDD8-208ENST00000560427 KIF25Q9UIL4 384 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 SESN1Q9Y6P5 492 aa10.64□□□□□ -0.71
NEDD8-208ENST00000560427 IGHV3OR16-10A0A075B7F0 116 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 LOC100506127A0A0U1RQW1 187 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 NPFFO15130 113 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 AIREO43918 545 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 SMIM18P0DKX4 95 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 OR10A3P58181 314 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 P2RY14Q15391 338 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 HEPN1Q6WQI6 88 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF497Q6ZNH5 498 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 GAPTQ8N292 157 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 OR51D1Q8NGF3 324 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 OR13F1Q8NGS4 319 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 OR13D1Q8NGV5 346 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 PLPPR1Q8TBJ4 325 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 NEK7Q8TDX7 302 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 C22orf15Q8WYQ4 148 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 PTX4Q96A99 478 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 LINC00574Q9H8X3 128 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 RAB9BQ9NP90 201 aa10.63□□□□□ -0.71
NEDD8-208ENST00000560427 PEX16Q9Y5Y5 336 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms