RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 DOPEY1Q5JWR5 2465 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 Q6P435 159 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 BRICD5Q6PL45 260 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 LURAP1LQ8IV03 231 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 OR5T2Q8NGG2 359 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 OR11L1Q8NGX0 322 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 GHITMQ9H3K2 345 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 IFT22Q9H7X7 185 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SPACA1Q9HBV2 294 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 CBLN4Q9NTU7 201 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 RNF7Q9UBF6 113 aa9.45□□□□□ -0.9
USP3-218ENST00000560202 SPTBN1Q01082 2364 aaKnown RBP9.44□□□□□ -0.9
USP3-218ENST00000560202 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.44□□□□□ -0.9
USP3-218ENST00000560202 SH2D1BO14796 132 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 KNG1P01042 644 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 CD8AP01732 235 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 FCER2P06734 321 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 DANCRP0C864 163 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 IRF2P14316 349 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 ZNF44P15621 663 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 PPOXP50336 477 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 AP3S2P59780 193 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 BOLLQ8N9W6 283 aaKnown RBP9.44□□□□□ -0.9
USP3-218ENST00000560202 UXS1Q8NBZ7 420 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 VRK1Q99986 396 aaPredicted RBP9.44□□□□□ -0.9
USP3-218ENST00000560202 SHARPINQ9H0F6 387 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 DPAGT1Q9H3H5 408 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 TAS2R8Q9NYW2 309 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 TREM2Q9NZC2 230 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 AK3Q9UIJ7 227 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 PLEKHA6Q9Y2H5 1048 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 NPTNQ9Y639 398 aa9.44□□□□□ -0.9
USP3-218ENST00000560202 USP9XQ93008 2570 aaPredicted RBP9.43□□□□□ -0.9
USP3-218ENST00000560202 FAM208BQ5VWN6 2430 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 MEIKINA0A087WXM9 373 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 TRAV24A0A0B4J272 114 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 UBE2QL1A1L167 161 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 FAM221AA4D161 298 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 CLEC18AA5D8T8 446 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 MCRIP1C9JLW8 97 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 J3QKU1 62 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 TSC22D2O75157 780 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 OR2H2O95918 312 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 HAND1O96004 215 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 CYB5R3P00387 301 aaPredicted RBP9.43□□□□□ -0.9
USP3-218ENST00000560202 SOD3P08294 240 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 CSF1P09603 554 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 NUP62P37198 522 aaPredicted RBP9.43□□□□□ -0.9
USP3-218ENST00000560202 CBX5P45973 191 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 DYRK1AQ13627 763 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 EXOSC2Q13868 293 aaKnown RBP9.43□□□□□ -0.9
USP3-218ENST00000560202 C11orf71Q6IPW1 123 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 CLEC18BQ6UXF7 455 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 DTX2Q86UW9 622 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 FAM90A1Q86YD7 464 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 TGIF2LYQ8IUE0 185 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 GVQW1Q8N7I0 195 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 SUMF2Q8NBJ7 301 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 CLEC18CQ8NCF0 446 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 CMSS1Q9BQ75 279 aaKnown RBP9.43□□□□□ -0.9
USP3-218ENST00000560202 OCSTAMPQ9BR26 566 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 OR51J1Q9H342 316 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 UBTD1Q9HAC8 227 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 IFT46Q9NQC8 304 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 OR14J1Q9UGF5 321 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 CACNG2Q9Y698 323 aa9.43□□□□□ -0.9
USP3-218ENST00000560202 A0A0A6YYJ9 748 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 A0A1B0GW55 424 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 RFPL4AA6NLU0 287 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 LRRC30A6NM36 301 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 FAM25EA8MYX2 175 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 RFPL4AL1F8VTS6 287 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 SIRPB1O00241 398 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 SLC33A1O00400 549 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 HSPB6O14558 160 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 TSPAN4O14817 238 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 PRAF2O60831 178 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 CLDN1O95832 211 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 HPXP02790 462 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 GLAP06280 429 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DUX4L2P0CJ85 424 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DUX4L3P0CJ86 424 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DUX4L4P0CJ87 422 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DUX4L5P0CJ88 424 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DUX4L6P0CJ89 424 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DUX4L7P0CJ90 424 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 CEBPDP49716 269 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 FLI1Q01543 452 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 ZNF273Q14593 569 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 FCN2Q15485 313 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 LINC00518Q8N0U6 118 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 BPIFB2Q8N4F0 458 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 TMEM229BQ8NBD8 167 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 DYRK2Q92630 601 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 RDH5Q92781 318 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 HDHD3Q9BSH5 251 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 DPCDQ9BVM2 203 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 ZNF436Q9C0F3 470 aaPredicted RBP9.42□□□□□ -0.9
USP3-218ENST00000560202 HRASLSQ9HDD0 168 aa9.42□□□□□ -0.9
USP3-218ENST00000560202 RDH8Q9NYR8 311 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms