RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 BDH1Q02338 343 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 LTC4SQ16873 150 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 ELP2Q6IA86 826 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 RPL22L1Q6P5R6 122 aaKnown RBP14.18□□□□□ -0.14
HDDC3-205ENST00000559898 ZNF485Q8NCK3 441 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 ZNF555Q8NEP9 628 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 PXT1Q8NFP0 134 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 OR51T1Q8NGJ9 327 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 KIRREL1Q96J84 757 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 GPER1Q99527 375 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 GAL3ST2Q9H3Q3 398 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 DPM3Q9P2X0 92 aa14.18□□□□□ -0.14
HDDC3-205ENST00000559898 ANKRD65E5RJM6 399 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 OGG1O15527 345 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 FBXO24O75426 580 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 AMY1AP04745 511 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 AMY2AP04746 511 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 CD34P28906 385 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 RPS11P62280 158 aaKnown RBP eCLIP14.17□□□□□ -0.14
HDDC3-205ENST00000559898 RBM39Q14498 530 aaKnown RBP14.17□□□□□ -0.14
HDDC3-205ENST00000559898 HLA-DRB5Q30154 266 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 PAN3Q58A45 887 aaKnown RBP14.17□□□□□ -0.14
HDDC3-205ENST00000559898 RSBN1Q5VWQ0 802 aaPredicted RBP14.17□□□□□ -0.14
HDDC3-205ENST00000559898 ASCL4Q6XD76 172 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 CHST4Q8NCG5 386 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 RFESDQ8TAC1 157 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 UBALD1Q8TB05 177 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 GGHQ92820 318 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 TMEM106AQ96A25 262 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 PRSS22Q9GZN4 317 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 ING4Q9UNL4 249 aa14.17□□□□□ -0.14
HDDC3-205ENST00000559898 TRAV8-7A0A075B6U6 113 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 MEIKINA0A087WXM9 373 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 PNMA8CA0A1B0GUJ8 204 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 A0A1W2PPE3 182 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 A0A1W2PPK0 400 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 BUB1B-PAK6H3BSN5 160 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 SSTR5P35346 364 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 MRPL28Q13084 256 aaKnown RBP14.16□□□□□ -0.14
HDDC3-205ENST00000559898 BEAN1Q3B7T3 259 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 TCTEX1D4Q5JR98 221 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 TPTE2P1Q5T6R2 138 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 C10orf67Q8IYJ2 551 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 Q8NFD4 153 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 MRGPRDQ8TDS7 321 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 GPR148Q8TDV2 347 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 RHOFQ9HBH0 211 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 BABAM2Q9NXR7 383 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 CALYQ9NYX4 217 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 PITPNC1Q9UKF7 332 aa14.16□□□□□ -0.14
HDDC3-205ENST00000559898 DIMT1Q9UNQ2 313 aaKnown RBP14.16□□□□□ -0.14
HDDC3-205ENST00000559898 A0A087X0M5 115 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 TRBV5-5A0A0J9YX44 114 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 KBTBD11-OT1A0A1B0GTJ5 212 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 A0A1B0GX30 115 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 A0A1W2PRX2 142 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 ZNF729A6NN14 1252 aaPredicted RBP14.15□□□□□ -0.14
HDDC3-205ENST00000559898 OPN1MWP04001 364 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 OPN1MW2P0DN77 364 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 OPN1MW3P0DN78 364 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 IGFBP3P17936 291 aaPredicted RBP14.15□□□□□ -0.14
HDDC3-205ENST00000559898 DCKP27707 260 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 VDAC2P45880 294 aaPredicted RBP14.15□□□□□ -0.14
HDDC3-205ENST00000559898 RSU1Q15404 277 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 CCDC58Q4VC31 144 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 DDI2Q5TDH0 399 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 DMKNQ6E0U4 476 aaPredicted RBP14.15□□□□□ -0.14
HDDC3-205ENST00000559898 OR52W1Q6IF63 320 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 C11orf88Q6PI97 169 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 RTN4RL2Q86UN3 420 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 SUMF2Q8NBJ7 301 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 OR4D6Q8NGJ1 314 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 GHSRQ92847 366 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 PGLYRP3Q96LB9 341 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 SLC25A33Q9BSK2 321 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 PCDHGB5Q9Y5G0 923 aa14.15□□□□□ -0.14
HDDC3-205ENST00000559898 FUOMA2VDF0 154 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 GEMIN2O14893 280 aaKnown RBP14.14□□□□□ -0.15
HDDC3-205ENST00000559898 XPNPEP2O43895 674 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 LPLP06858 475 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 SERPINA2P20848 420 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 GNG10P50151 68 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 IL13RA2Q14627 380 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 RCN1Q15293 331 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 ABCA11PQ4W5N1 156 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 OXLD1Q5BKU9 147 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 ARSJQ5FYB0 599 aaPredicted RBP14.14□□□□□ -0.15
HDDC3-205ENST00000559898 SAMD5Q5TGI4 173 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 C5orf24Q7Z6I8 188 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 ZNF596Q8TC21 504 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 SMIM19Q96E16 107 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 RDH12Q96NR8 316 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 IDI2-AS1Q9NZ38 188 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 ST3GAL6Q9Y274 331 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 ZNF281Q9Y2X9 895 aa14.14□□□□□ -0.15
HDDC3-205ENST00000559898 LEUTXA8MZ59 168 aa14.13□□□□□ -0.15
HDDC3-205ENST00000559898 TOR1AO14656 332 aa14.13□□□□□ -0.15
HDDC3-205ENST00000559898 ALDOBP05062 364 aa14.13□□□□□ -0.15
HDDC3-205ENST00000559898 ZNF93P35789 620 aaPredicted RBP14.13□□□□□ -0.15
HDDC3-205ENST00000559898 RBM11P57052 281 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms