RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 KIR3DL3Q8N743 410 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 DNAAF1Q8NEP3 725 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 DIRAS2Q96HU8 199 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 LYZL4Q96KX0 146 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 TCEAL7Q9BRU2 100 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 CHST5Q9GZS9 411 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 CNTD2Q9H8S5 307 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 RHOFQ9HBH0 211 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 SLC25A10Q9UBX3 287 aaPredicted RBP7.21□□□□□ -1.25
USP3-208ENST00000558285 SSR3Q9UNL2 185 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 EXOGQ9Y2C4 368 aaKnown RBP7.21□□□□□ -1.25
USP3-208ENST00000558285 EXOSC1Q9Y3B2 195 aaKnown RBP7.21□□□□□ -1.25
USP3-208ENST00000558285 KPTNQ9Y664 436 aa7.21□□□□□ -1.25
USP3-208ENST00000558285 TRAV6A0A075B6T7 132 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 LOC107986453A0A1B0GWG9 222 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 BTBD17A6NE02 478 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 OR2AT4A6NND4 320 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 ACAA1P09110 424 aaPredicted RBP7.21□□□□□ -1.26
USP3-208ENST00000558285 S100PP25815 95 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 RPS19P39019 145 aaKnown RBP7.21□□□□□ -1.26
USP3-208ENST00000558285 INPP1P49441 399 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 CAV3P56539 151 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 IL24Q13007 206 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 SMN1Q16637 294 aaKnown RBP7.21□□□□□ -1.26
USP3-208ENST00000558285 WDR38Q5JTN6 314 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 HES5Q5TA89 166 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 TMEM42Q69YG0 159 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 LHFPL2Q6ZUX7 228 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 BTN2A1Q7KYR7 527 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 ZNF561Q8N587 486 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 MS4A15Q8N5U1 240 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 POC1AQ8NBT0 407 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 OR5D14Q8NGL3 314 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 OR13C3Q8NGS6 347 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 OR14K1Q8NGZ2 314 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 OR2G2Q8NGZ5 317 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 NPRL2Q8WTW4 380 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 AQP3Q92482 292 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 H1FXQ92522 213 aaKnown RBP7.21□□□□□ -1.26
USP3-208ENST00000558285 SLC25A28Q96A46 364 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 LINC00052Q96N35 136 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 FAM234AQ9H0X4 552 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 NOX4Q9NPH5 578 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 NDUFB11Q9NX14 153 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 FAM96BQ9Y3D0 163 aa7.21□□□□□ -1.26
USP3-208ENST00000558285 FAM230AA0A1W2PPH8 454 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 C5orf63A6NC05 138 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 TRAPPC2LH3BP13 241 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 DNASE2O00115 360 aaPredicted RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 SRSF10O75494 262 aaKnown RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 GPX5O75715 221 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 FABP1P07148 127 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 NDUFB7P17568 137 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 AZGP1P25311 298 aaKnown RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 C21orf33P30042 268 aaPredicted RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 SLC6A1P30531 599 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 ARHGDIBP52566 201 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 TAS2R43P59537 309 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 SEC61A1P61619 476 aaKnown RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 RELQ04864 619 aaPredicted RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 ALKBH1Q13686 389 aaKnown RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 FAM201AQ5SY85 155 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 STUMQ69YW2 141 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 C1orf122Q6ZSJ8 110 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 Q6ZSR3 168 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 BVESQ8NE79 360 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 TMEM185AQ8NFB2 350 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 OR5D13Q8NGL4 314 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 OR52N1Q8NH53 320 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 OR5AK2Q8NH90 309 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 FAM216AQ8WUB2 273 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 TSEN15Q8WW01 171 aaKnown RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 HPSE2Q8WWQ2 592 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 GCDHQ92947 438 aaPredicted RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 C4orf36Q96KX1 117 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 OR5M11Q96RB7 305 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 CCL13Q99616 98 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 SEC22CQ9BRL7 303 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 PCGF1Q9BSM1 259 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 PDCD10Q9BUL8 212 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 DPCDQ9BVM2 203 aaPredicted RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 C19orf24Q9BVV8 132 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 BARHL1Q9BZE3 327 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 PPP1R3EQ9H7J1 279 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 MMP26Q9NRE1 261 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 GPR173Q9NS66 373 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 MRPS18AQ9NVS2 196 aaKnown RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 ONECUT1Q9UBC0 465 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 CKLFQ9UBR5 152 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 MLXQ9UH92 298 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 RPUSD1Q9UJJ7 312 aaKnown RBP7.2□□□□□ -1.26
USP3-208ENST00000558285 DHDHQ9UQ10 334 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 MALRD1Q5VYJ5 2156 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 NF1P21359 2839 aa7.2□□□□□ -1.26
USP3-208ENST00000558285 IGHV3OR15-7A0A075B7D8 119 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 MEIKINA0A087WXM9 373 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 M0R1W7 72 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 SIGLEC5O15389 551 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 KNG1P01042 644 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 IGHA1P01876 353 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms