RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PARP11Q9NR21 331 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 CACNA1GO43497 2377 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 C9orf170A2RU37 121 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 CEACAM18A8MTB9 384 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 PDCD6O75340 191 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 NGFP01138 241 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 FAM157CP0CG43 387 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 HKR1P10072 659 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 GABRR1P24046 479 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 CHATP28329 748 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 RAB5CP51148 216 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 IDH3GP51553 393 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-229ENST00000557348 DVL1P1P54792 670 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-229ENST00000557348 RBM11P57052 281 aaKnown RBP10.85□□□□□ -0.67
SHMT2-229ENST00000557348 SURF2Q15527 256 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-229ENST00000557348 TBR1Q16650 682 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 SCGB2B2Q4G0G5 96 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 TMEM88Q6PEY1 159 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 CD163Q86VB7 1156 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 OR5P3Q8WZ94 311 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 EMG1Q92979 244 aaKnown RBP10.85□□□□□ -0.67
SHMT2-229ENST00000557348 ABHD17AQ96GS6 310 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 SLC6A7Q99884 636 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 RTL8AQ9BWD3 113 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 SPACA1Q9HBV2 294 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 RAB18Q9NP72 206 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 ZNF71Q9NQZ8 489 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-229ENST00000557348 TUBD1Q9UJT1 453 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 ST3GAL6Q9Y274 331 aa10.85□□□□□ -0.67
SHMT2-229ENST00000557348 OR5H1A6NKK0 313 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 LINC00587B1AMM8 73 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 TRAPPC2LH3BP13 241 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 PRRG2O14669 202 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 ANGPTL7O43827 346 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 FBXO24O75426 580 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 IGHV2-70P01814 119 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 GAPDHP04406 335 aaKnown RBP10.84□□□□□ -0.67
SHMT2-229ENST00000557348 GLP1RP43220 463 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 KCNJ3P48549 501 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 F2RL1P55085 397 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 FGF12P61328 243 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 IL13RA1P78552 427 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 IL24Q13007 206 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 HABP2Q14520 560 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-229ENST00000557348 MPV17LQ2QL34 196 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 FAM76BQ5HYJ3 339 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 ZNF324BQ6AW86 544 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-229ENST00000557348 SLC25A26Q70HW3 274 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 BHLHA15Q7RTS1 189 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-229ENST00000557348 CBLN2Q8IUK8 224 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 Q8IYB0 196 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 GVQW1Q8N7I0 195 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 OR4S1Q8NGB4 309 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 TERB2Q8NHR7 220 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 LYPD6BQ8NI32 183 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 HPSE2Q8WWQ2 592 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 CMSS1Q9BQ75 279 aaKnown RBP10.84□□□□□ -0.67
SHMT2-229ENST00000557348 ARHGAP21Q5T5U3 1957 aa10.84□□□□□ -0.67
SHMT2-229ENST00000557348 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-229ENST00000557348 IQCF6A8MYZ5 107 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 ZNF732B4DXR9 585 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 RNASEK-C17orf49H0YIS7 233 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 IGLV1-44P01699 117 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 IGHV2-5P01817 119 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 GLAP06280 429 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 FUT3P21217 361 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 GPM6AP51674 278 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 SNU13P55769 128 aaKnown RBP10.83□□□□□ -0.68
SHMT2-229ENST00000557348 UCP2P55851 309 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 MZT1Q08AG7 82 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 CHRFAM7AQ494W8 412 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 LBHQ53QV2 105 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-229ENST00000557348 DMRTC1Q5HYR2 192 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 PRSS54Q6PEW0 395 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 FBXL14Q8N1E6 418 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 NANPQ8TBE9 248 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 NIT2Q9NQR4 276 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 TP53TG5Q9Y2B4 290 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 POLDIP2Q9Y2S7 368 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 MEMO1Q9Y316 297 aa10.83□□□□□ -0.68
SHMT2-229ENST00000557348 IGKV1-12A0A0C4DH73 117 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 TMEM210A6NLX4 147 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 J3QT63 122 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 MSTNO14793 375 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 IGKV1D-12P01611 117 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 SPINK2P20155 84 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 CEACAM8P31997 349 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-229ENST00000557348 OPRM1P35372 400 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 SULT1A2P50226 295 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 FOXF2Q12947 444 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 IL13RA2Q14627 380 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 RHEBQ15382 184 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 TAF9Q16594 264 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 SRSF7Q16629 238 aaKnown RBP eCLIP10.82□□□□□ -0.68
SHMT2-229ENST00000557348 TIMM23BQ5SRD1 257 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 OR52W1Q6IF63 320 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 C6orf201Q7Z4U5 140 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 CXorf67Q86X51 503 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-229ENST00000557348 ZNF610Q8N9Z0 462 aa10.82□□□□□ -0.68
SHMT2-229ENST00000557348 WDR31Q8NA23 367 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms