RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 LINC00312Q9Y6C7 94 aa11.55□□□□□ -0.56
PTCH1-226ENST00000553011 TRAV1-2A0A0B4J238 106 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 ODAMA1E959 279 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 SLC17A2O00624 439 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 MPIG6BO95866 241 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 MYL9P24844 172 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 CLDN12P56749 244 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 OR10A3P58181 314 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 QRFPP83859 136 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 DEFB112Q30KQ8 113 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 TRAPPC6BQ86SZ2 158 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 PIP4P2Q8N4L2 257 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 Q96M66 194 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 ZNF714Q96N38 554 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 CST11Q9H112 138 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 ESM1Q9NQ30 184 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 KIF25Q9UIL4 384 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 V9GY05 133 aa11.54□□□□□ -0.56
PTCH1-226ENST00000553011 TRGV10A0A0A0MS01 117 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 hCG_1809904A0A1W2PP81 198 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 A0A1W2PPE2 198 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 A0A1W2PR64 198 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 A0A1W2PRV1 198 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 FUOMA2VDF0 154 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 TRIM64CA6NLI5 447 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 BPNT1O95861 308 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 CD36P16671 472 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 COX7A1P24310 79 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 GADD45AP24522 165 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 FGF9P31371 208 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-226ENST00000553011 BPIFB3P59826 476 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 HILS1P60008 231 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 GUCA2AQ02747 115 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 UNC119Q13432 240 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 RAB11BQ15907 218 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 HES5Q5TA89 166 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 RSBN1Q5VWQ0 802 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-226ENST00000553011 NCR3LG1Q68D85 454 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 USP43Q70EL4 1123 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 CORO2AQ92828 525 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 CHCHD6Q9BRQ6 235 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 TMEM59Q9BXS4 323 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 VCX3AQ9NNX9 186 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 RCC2Q9P258 522 aaKnown RBP11.53□□□□□ -0.56
PTCH1-226ENST00000553011 SSR3Q9UNL2 185 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 UBE2J1Q9Y385 318 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-226ENST00000553011 STAB1Q9NY15 2570 aa11.53□□□□□ -0.56
PTCH1-226ENST00000553011 MEIKINA0A087WXM9 373 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 A0A0A6YYJ9 748 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 A0A0U1RQK1 487 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 SMIM30A4D0T7 59 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A10PA6NDY2 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A18PA6NE21 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A16PA6NEW6 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A20PA6NIJ5 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A8PA6NJQ4 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A7PA6NKC0 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A22PA8MWA6 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 TMEM14DPA8MWL7 114 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A12PA8MX19 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A5PA8MXJ8 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A23PA8MXZ1 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 PDCD5O14737 125 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 NPFFO15130 113 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 MMP23AO75900 390 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 RBP4P02753 201 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A15PP0C7V4 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A13PP0C7W8 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A14PP0C7W9 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 FAM90A24PP0C7X0 464 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 IGHV1-8P0DP01 117 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 RAB3BP20337 219 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 GLP1RP43220 463 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 KCNJ3P48549 501 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 UBE2E1P51965 193 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 SIGIRRQ6IA17 410 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 RBMS3Q6XE24 437 aaKnown RBP11.52□□□□□ -0.57
PTCH1-226ENST00000553011 NR2C2APQ86WQ0 139 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 ZDHHC22Q8N966 263 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 OR51D1Q8NGF3 324 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 OR13A1Q8NGR1 328 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 KCNG3Q8TAE7 436 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 NEK7Q8TDX7 302 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 DUX5Q96PT3 197 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 NICN1Q9BSH3 213 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 BARHL1Q9BZE3 327 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 RNF167Q9H6Y7 350 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 HEXA-AS1Q9H8Q6 139 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 PEX16Q9Y5Y5 336 aa11.52□□□□□ -0.57
PTCH1-226ENST00000553011 TRAV39A0A0B4J263 110 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 LOC100506127A0A0U1RQW1 187 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 CLPXO76031 633 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 SMIM18P0DKX4 95 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 ARSBP15848 533 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 JUNBP17275 347 aaPredicted RBP11.51□□□□□ -0.57
PTCH1-226ENST00000553011 SAA4P35542 130 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 GDNFP39905 211 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 PSMD7P51665 324 aa11.51□□□□□ -0.57
PTCH1-226ENST00000553011 RPS27AP62979 156 aaKnown RBP11.51□□□□□ -0.57
PTCH1-226ENST00000553011 PAX5Q02548 391 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms