RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 COQ2Q96H96 371 aa8.17□□□□□ -1.1
VPS29-208ENST00000550267 PLEKHA1Q9HB21 404 aa8.17□□□□□ -1.1
VPS29-208ENST00000550267 GSTK1Q9Y2Q3 226 aa8.17□□□□□ -1.1
VPS29-208ENST00000550267 AMMECR1Q9Y4X0 333 aaPredicted RBP8.17□□□□□ -1.1
VPS29-208ENST00000550267 TRBV2A0A0J9YWF9 115 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 TCRBV5S2A0A599 114 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 FUOMA2VDF0 154 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 TRIM64CA6NLI5 447 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 E2F6O75461 281 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 HMGN1P05114 100 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 ELANEP08246 267 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 SPNP16150 400 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 CCL1P22362 96 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 PRDX6P30041 224 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 POU3F4P49335 361 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 CDC42P60953 191 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 CDK5Q00535 292 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 KRBOX4Q5JUW0 171 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 SPIN3Q5JUX0 258 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 FAM27D1Q5T7N8 215 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 ASPHD1Q5U4P2 390 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 TMEM236Q5W0B7 351 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 PGAM4Q8N0Y7 254 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 GIPC3Q8TF64 312 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 TM2D3Q9BRN9 247 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 ABCG5Q9H222 651 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 EXOSC4Q9NPD3 245 aaKnown RBP8.16□□□□□ -1.1
VPS29-208ENST00000550267 ISYNA1Q9NPH2 558 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 ADAM30Q9UKF2 790 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 TMEM14AQ9Y6G1 99 aa8.16□□□□□ -1.1
VPS29-208ENST00000550267 PLECQ15149 4684 aaKnown RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 IGHV3-72A0A0B4J1Y9 119 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 ZNF729A6NN14 1252 aaPredicted RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 NCBP2LA6PVI3 153 aaKnown RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 J3QR06 171 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 SH2D1BO14796 132 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 GATBO75879 557 aaKnown RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 CYB5AP00167 134 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 IGHG4P01861 327 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 RAB7AP51149 207 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 CXCR4P61073 352 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 CFHR3Q02985 330 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 SCN1BQ07699 218 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 MADCAM1Q13477 382 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 ZNF322Q6U7Q0 402 aaPredicted RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 OR8H3Q8N146 312 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 Q8N9W7 124 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 GON7Q9BXV9 100 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 CHST5Q9GZS9 411 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 PPIL3Q9H2H8 161 aaKnown RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 HMG20AQ9NP66 347 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 LIN7CQ9NUP9 197 aaKnown RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 MRM2Q9UI43 246 aaKnown RBP8.15□□□□□ -1.1
VPS29-208ENST00000550267 SNX5Q9Y5X3 404 aa8.15□□□□□ -1.1
VPS29-208ENST00000550267 KBTBD11-OT1A0A1B0GTJ5 212 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 SYT7O43581 403 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 JTBO76095 146 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 RPP14O95059 124 aaKnown RBP8.14□□□□□ -1.11
VPS29-208ENST00000550267 OR8U8P0C7N1 319 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 OSMP13725 252 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 GP9P14770 177 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 ZNF44P15621 663 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 RBP2P50120 134 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 GNG10P50151 68 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 ATP1B3P54709 279 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 EBI3Q14213 229 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 ATXN7L3Q14CW9 347 aaPredicted RBP8.14□□□□□ -1.11
VPS29-208ENST00000550267 LTC4SQ16873 150 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 FAM53AQ6NSI3 398 aaPredicted RBP8.14□□□□□ -1.11
VPS29-208ENST00000550267 TMEM179BQ7Z7N9 219 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 ZNF429Q86V71 674 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 TGIF2LXQ8IUE1 241 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 OR1N2Q8NGR9 330 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 DCUN1D4Q92564 292 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 RFT1Q96AA3 541 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 EAF1Q96JC9 268 aaPredicted RBP8.14□□□□□ -1.11
VPS29-208ENST00000550267 OR5B12Q96R08 314 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 CNN2Q99439 309 aaKnown RBP8.14□□□□□ -1.11
VPS29-208ENST00000550267 CCDC134Q9H6E4 229 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 MAGIXQ9H6Y5 334 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 GNB4Q9HAV0 340 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 TVP23BQ9NYZ1 205 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 ACTR3BQ9P1U1 418 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 PSG11Q9UQ72 335 aa8.14□□□□□ -1.11
VPS29-208ENST00000550267 IGKV1-12A0A0C4DH73 117 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 A0A1W2PPE3 182 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 I3L521 148 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 OVOL1O14753 267 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 LDLRAD4O15165 306 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 RRP9O43818 475 aaKnown RBP8.13□□□□□ -1.11
VPS29-208ENST00000550267 SAP30O75446 220 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 SERPINA3P01011 423 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 IGKV1D-12P01611 117 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 CSN2P05814 226 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 CGB3P0DN86 165 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 CGB7P0DN87 165 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 VDAC1P21796 283 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 PSMB8P28062 276 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 GLP1RP43220 463 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 REG1BP48304 166 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms