RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 OR8D2Q9GZM6 311 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 SYT4Q9H2B2 425 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 TXNIPQ9H3M7 391 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 PATZ1Q9HBE1 687 aaKnown RBP2.52□□□□□ -2.01
USP28-210ENST00000542033 MYOZ2Q9NPC6 264 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 EXOSC3Q9NQT5 275 aaKnown RBP2.52□□□□□ -2.01
USP28-210ENST00000542033 UBQLN4Q9NRR5 601 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 LYRM2Q9NU23 88 aaPredicted RBP2.52□□□□□ -2.01
USP28-210ENST00000542033 SPANXCQ9NY87 97 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 ARMCX1Q9P291 453 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 HHLA2Q9UM44 414 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 NEU3Q9UQ49 428 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 ST3GAL6Q9Y274 331 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 POLDIP2Q9Y2S7 368 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 TPRKBQ9Y3C4 175 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 TP53BP1Q12888 1972 aaPredicted RBP2.52□□□□□ -2.01
USP28-210ENST00000542033 TANC1Q9C0D5 1861 aa2.52□□□□□ -2.01
USP28-210ENST00000542033 USP6P35125 1406 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 IGHV3OR16-12A0A075B7B8 117 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 LRP5LA4QPB2 252 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 VSTM2BA6NLU5 285 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 FOXI3A8MTJ6 420 aaPredicted RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 INMT-MINDY4F8WBC2 141 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 G3V4G9 280 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 H0Y980 276 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 CLDN34H7C241 214 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 BCL2L11O43521 198 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 SNAI2O43623 268 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 SRSF10O75494 262 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 RCBTB2O95199 551 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 GPR75O95800 540 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 AIFM1O95831 613 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 CLIC3O95833 236 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 CFDP00746 253 aaPredicted RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 RENP00797 406 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 IGHV3-9P01782 118 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 IGHG3P01860 377 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 TYMSP04818 313 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ARG1P05089 322 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 DCNP07585 359 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 UBBP0CG47 229 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 OR13C7P0DN81 318 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 PVRP15151 417 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 RAB5AP20339 215 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 KITLGP21583 273 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 PSMA1P25786 263 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 ADORA1P30542 326 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 IL2RGP31785 369 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ACVR1BP36896 505 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 POLR2IP36954 125 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 RPL13AP40429 203 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 NPBWR2P48146 333 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 RPL34P49207 117 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 CLDN12P56749 244 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ERVPABLB-1P60509 514 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 STXBP1P61764 594 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 RPL8P62917 257 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 UBA52P62987 128 aaKnown RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 SELENOWP63302 87 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 BTN3A2P78410 334 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 MXD1Q05195 221 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 C1orf61Q13536 156 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 TPBGQ13641 420 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 LAGE3Q14657 143 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 PSG5Q15238 335 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 RHEBQ15382 184 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 CCL14Q16627 93 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 IQCJQ1A5X6 159 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ALKBH6Q3KRA9 238 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 C6orf226Q5I0X4 101 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 TMEM236Q5W0B7 351 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 CST9Q5W186 159 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 SAXO2Q658L1 398 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 OR52W1Q6IF63 320 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ALKAL1Q6UXT8 129 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ASCL4Q6XD76 172 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 IL34Q6ZMJ4 242 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 TMPRSS11AQ6ZMR5 421 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 TMPPEQ6ZT21 453 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 AHSA2Q719I0 299 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ZNF571Q7Z3V5 609 aaPredicted RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 SH2D6Q7Z4S9 175 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 MARCH9Q86YJ5 346 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 CBLN2Q8IUK8 224 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 C9orf40Q8IXQ3 194 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 GABRG1Q8N1C3 465 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 FGFRL1Q8N441 504 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 TMEM251Q8N6I4 163 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 OR4S1Q8NGB4 309 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 OR5A2Q8NGI9 324 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 OR51G2Q8NGK0 314 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 OR10D4PQ8NGN7 298 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 MARCH1Q8TCQ1 289 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 BADQ92934 168 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 FAM131CQ96AQ9 280 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 C1orf147Q96MC9 270 aaPredicted RBP2.51□□□□□ -2.01
USP28-210ENST00000542033 MS4A4EQ96PG1 132 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 ARHGDIGQ99819 225 aa2.51□□□□□ -2.01
USP28-210ENST00000542033 NRIP2Q9BQI9 281 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms