RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 RELL2Q8NC24 303 aaPredicted RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 MRPL24Q96A35 216 aaKnown RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 MSI2Q96DH6 328 aaKnown RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 CNTNAP3BQ96NU0 1288 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 CNTNAP3Q9BZ76 1288 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 OR51B6Q9H340 312 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 RIMS4Q9H426 269 aaPredicted RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 KCNIP3Q9Y2W7 256 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 ST8SIA5O15466 376 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 TUSC2O75896 110 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 LYZL6O75951 148 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 IGKV3-15P01624 115 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 S100A6P06703 90 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 OR5AC1P0C628 307 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 CBR1P16152 277 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 NBL1P41271 181 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 MEOX2P50222 304 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 ERVK11-1P61568 191 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 ZNF169Q14929 603 aaPredicted RBP11.74□□□□□ -0.53
RTN3-210ENST00000540798 HERPUD1Q15011 391 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 SPATA46Q5T0L3 261 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 WDR31Q8NA23 367 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 SUMF2Q8NBJ7 301 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 TAAR6Q96RI8 345 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 PLSCR4Q9NRQ2 329 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 PFDN2Q9UHV9 154 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 ASPMQ8IZT6 3477 aa11.74□□□□□ -0.53
RTN3-210ENST00000540798 TRAV24A0A0B4J272 114 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 FAM74A7A6NL05 159 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 IQCF6A8MYZ5 107 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 F5H0A9 414 aaPredicted RBP11.73□□□□□ -0.53
RTN3-210ENST00000540798 FABP1P07148 127 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 RAC2P15153 192 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 ZP3P21754 424 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 FXYD4P59646 89 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 IAH1Q2TAA2 248 aaPredicted RBP11.73□□□□□ -0.53
RTN3-210ENST00000540798 FAM74A3Q4VXF1 159 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 ABCA11PQ4W5N1 156 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 PAN3Q58A45 887 aaKnown RBP11.73□□□□□ -0.53
RTN3-210ENST00000540798 LIAT1Q6ZQX7 453 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 FAM58AQ8N1B3 248 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 MRPL30Q8TCC3 161 aaKnown RBP11.73□□□□□ -0.53
RTN3-210ENST00000540798 ZNF488Q96MN9 340 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 RTL8AQ9BWD3 113 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 SLC5A7Q9GZV3 580 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 DNTTIP1Q9H147 329 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 DLL3Q9NYJ7 618 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 ATP23Q9Y6H3 246 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 LRP5LA4QPB2 252 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 AHRRA9YTQ3 701 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 H7C1Q1 480 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 RND3P61587 244 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 SNTB1Q13884 538 aaKnown RBP11.73□□□□□ -0.53
RTN3-210ENST00000540798 OR2A2Q6IF42 318 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 Q6P435 159 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 VWA1Q6PCB0 445 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 GLYATL2Q8WU03 294 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 OR2J1Q9GZK6 312 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 CDH20Q9HBT6 801 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 DKK4Q9UBT3 224 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 SHANK1Q9Y566 2161 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 TRDCB7Z8K6 153 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 RHBDL1O75783 438 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 IDH3GP51553 393 aaPredicted RBP11.73□□□□□ -0.53
RTN3-210ENST00000540798 Q3ZCU0 254 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 FAM74A1Q5RGS3 127 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 FAM185AQ8N0U4 392 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 BVESQ8NE79 360 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 SYT3Q9BQG1 590 aa11.73□□□□□ -0.53
RTN3-210ENST00000540798 IGKV1-6A0A0C4DH72 117 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 KIR2DS1A0A191URI9 304 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 A0A1W2PR80 420 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 FGF16O43320 207 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 DEDDO75618 318 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 IFNA21P01568 189 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 SCTP09683 121 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 KIR2DS4P43632 304 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 UCP2P55851 309 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 HERV-K104P61576 105 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 KIR2DS1Q14954 304 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 ZNF565Q8N9K5 539 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 CCDC71LQ8N9Z2 235 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 OR11L1Q8NGX0 322 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 ZFHX2Q9C0A1 2572 aaPredicted RBP11.72□□□□□ -0.53
RTN3-210ENST00000540798 FRYQ5TBA9 3013 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 CGAP01215 116 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 TPT1P13693 172 aaKnown RBP11.72□□□□□ -0.53
RTN3-210ENST00000540798 GNRHRP30968 328 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 ERVS71-1P61550 626 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 TSC22D1Q15714 1073 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 PHLDA2Q53GA4 152 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 CYB5R2Q6BCY4 276 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 SLC25A40Q8TBP6 338 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 TMEM100Q9NV29 134 aa11.72□□□□□ -0.53
RTN3-210ENST00000540798 EP300Q09472 2414 aaPredicted RBP11.72□□□□□ -0.53
RTN3-210ENST00000540798 TNFSF13O75888 250 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 ATG12O94817 140 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 ACAA1P09110 424 aaPredicted RBP11.71□□□□□ -0.53
RTN3-210ENST00000540798 CTXN2P0C2S0 81 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 HKR1P10072 659 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms