RNA–Protein interactions for RNA: ENST00000538862.6

CDCA3-207, Transcript of cell division cycle associated 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA3, Length 1,943 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-207ENST00000538862 FAM90A12PA8MX19 464 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FAM90A5PA8MXJ8 464 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FAM90A23PA8MXZ1 464 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 TRAPPC6AO75865 159 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 C1QL1O75973 258 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FARS2O95363 451 aaKnown RBP12.52□□□□□ -0.4
CDCA3-207ENST00000538862 F12P00748 615 aaPredicted RBP12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FAM90A15PP0C7V4 464 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FAM90A13PP0C7W8 464 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FAM90A14PP0C7W9 464 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FAM90A24PP0C7X0 464 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 P2RY1P47900 373 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 HOXA1P49639 335 aaPredicted RBP12.52□□□□□ -0.4
CDCA3-207ENST00000538862 CLDN15P56746 228 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 FXYD4P59646 89 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 ZNF124Q15973 351 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 WIPI1Q5MNZ9 446 aaPredicted RBP12.52□□□□□ -0.4
CDCA3-207ENST00000538862 ACER2Q5QJU3 275 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 COLCA1Q6ZS62 124 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 LYZL2Q7Z4W2 148 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 DYRK2Q92630 601 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 TCFL5Q9UL49 500 aa12.52□□□□□ -0.4
CDCA3-207ENST00000538862 C21orf140B9A014 251 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 LINC01387J3KSC0 135 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 OTX2P32243 289 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 RFC3P40938 356 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 PRSS12P56730 875 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 SSPNQ14714 243 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 HMGN3Q15651 99 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 Q6ZS49 121 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 FAM185AQ8N0U4 392 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 ERGIC1Q969X5 290 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 GINS3Q9BRX5 216 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 SMIM3Q9BZL3 60 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 TMED3Q9Y3Q3 217 aa12.52□□□□□ -0.41
CDCA3-207ENST00000538862 FAM157AC9JC47 383 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 ST8SIA3O43173 380 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 DANCRP0C864 163 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 EDN3P14138 238 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 UCP2P55851 309 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 GFRA1P56159 465 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 HERV-K104P61576 105 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 SRSF7Q16629 238 aaKnown RBP eCLIP12.51□□□□□ -0.41
CDCA3-207ENST00000538862 PHLDA2Q53GA4 152 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 BRICD5Q6PL45 260 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 KIRREL1Q96J84 757 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 DEPPQ9NTK1 212 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 PARPBPQ9NWS1 579 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 ZNF462Q96JM2 2506 aa12.51□□□□□ -0.41
CDCA3-207ENST00000538862 FAM221AA4D161 298 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 ZNF205O95201 554 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 SERPINA7P05543 415 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 GLAP06280 429 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 GDF1P27539 372 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 CD80P33681 288 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 CYB561P49447 251 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 RAB5CP51148 216 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 SRPXP78539 464 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 TSPO2Q5TGU0 170 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 FBXW12Q6X9E4 464 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 STX12Q86Y82 276 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 CALHM1Q8IU99 346 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 ZNF611Q8N823 705 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 OR5L1Q8NGL2 311 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 SVIPQ8NHG7 77 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 GPR87Q9BY21 358 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 SAV1Q9H4B6 383 aaPredicted RBP12.5□□□□□ -0.41
CDCA3-207ENST00000538862 ZNF442Q9H7R0 627 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 KPTNQ9Y664 436 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 IGKV3D-15A0A087WSY6 115 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 PPYP01298 95 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 SPP1P10451 314 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 AADACP22760 399 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 SAXO1Q8IYX7 474 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 ABHD3Q8WU67 409 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 LINC00470Q9BZP3 86 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 LUZP4Q9P127 313 aa12.5□□□□□ -0.41
CDCA3-207ENST00000538862 PCSK5Q92824 1860 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 ZNF587BE7ETH6 402 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 RPL36A-HNRNPH2H7BZ11 118 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 AGPAT2O15120 278 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 PHF1O43189 567 aaPredicted RBP12.49□□□□□ -0.41
CDCA3-207ENST00000538862 DIRAS3O95661 229 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 TSPAN15O95858 294 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 OR8U9P0C7N5 309 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 PAX6P26367 422 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 RAB13P51153 203 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 FOXO1Q12778 655 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 PEA15Q15121 130 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 Q6ZPA2 131 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 SLC25A26Q70HW3 274 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 NAXEQ8NCW5 288 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 CPEB3Q8NE35 698 aaKnown RBP12.49□□□□□ -0.41
CDCA3-207ENST00000538862 OR52M1Q8NGK5 317 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 OR11L1Q8NGX0 322 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 OR8U1Q8NH10 309 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 ZNF845Q96IR2 970 aaPredicted RBP12.49□□□□□ -0.41
CDCA3-207ENST00000538862 WFDC1Q9HC57 220 aa12.49□□□□□ -0.41
CDCA3-207ENST00000538862 STRAPQ9Y3F4 350 aaKnown RBP12.49□□□□□ -0.41
CDCA3-207ENST00000538862 SHANK1Q9Y566 2161 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms