RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 RAB36O95755 333 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 CD8AP01732 235 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 HRES1P13985 223 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 SPNP16150 400 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 GTF2H1P32780 548 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 TGFBR2P37173 567 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 SPAM1P38567 509 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 ACTR1BP42025 376 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 MEF2BQ02080 365 aaPredicted RBP1.36□□□□□ -2.19
CD44-238ENST00000534296 PRDX1Q06830 199 aaKnown RBP1.36□□□□□ -2.19
CD44-238ENST00000534296 CEACAM16Q2WEN9 425 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 C18orf21Q32NC0 220 aaPredicted RBP1.36□□□□□ -2.19
CD44-238ENST00000534296 TMEM215Q68D42 235 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 CLEC18BQ6UXF7 455 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 AHSA2Q719I0 299 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 SSH2Q76I76 1423 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 SSX7Q7RTT5 188 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 COMTD1Q86VU5 262 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 SPICQ8N5J4 248 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 GATD1Q8NB37 220 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 OR2K2Q8NGT1 345 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 PDCD6IPQ8WUM4 868 aaKnown RBP1.36□□□□□ -2.19
CD44-238ENST00000534296 GTF2H4Q92759 462 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 HIST1H2BAQ96A08 127 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 CPB2Q96IY4 423 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 BIRC8Q96P09 236 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 PKMYT1Q99640 499 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 SUCNR1Q9BXA5 334 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 MFSD1Q9H3U5 465 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 IFT46Q9NQC8 304 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 RMND1Q9NWS8 449 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 R4GN34 69 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 RPRD2Q5VT52 1461 aaKnown RBP1.36□□□□□ -2.19
CD44-238ENST00000534296 ABCB11O95342 1321 aa1.36□□□□□ -2.19
CD44-238ENST00000534296 POLR3AO14802 1390 aaPredicted RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 BAHCC1Q9P281 2608 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 IGHV1-45A0A0A0MS14 117 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 IGHV2-26A0A0B4J1V2 119 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 IGHV3-43A0A0B4J1X8 118 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 GOLGA8QA0A0J9YX86 632 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 A0A1W2PNN7 141 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 ERICH2A1L162 156 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 GGTLC3B5MD39 225 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 KLRC4-KLRK1H3BQV0 150 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 J3QRE1 110 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 K7EQS6 105 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 K7ERQ8 282 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 SULT1C2O00338 296 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 PLPP3O14495 311 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 ISLRO14498 428 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 LIN7AO14910 233 aaPredicted RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 YKT6O15498 198 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 TNFAIP8O95379 198 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 FSTL3O95633 263 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 FADS2O95864 444 aaKnown RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 CA2P00918 260 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 TRGV3P03979 118 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 CCL2P13500 99 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 CBR1P16152 277 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 CRABP1P29762 137 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 UGT2B10P36537 528 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 STX3Q13277 289 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 ZNF470Q6ECI4 717 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 TTC33Q6PID6 262 aaPredicted RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 TPGS1Q6ZTW0 290 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 CCDC121Q6ZUS5 278 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 NIT1Q86X76 327 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 ZBTB8OSQ8IWT0 167 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 ZFP82Q8N141 532 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 LY6G5BQ8NDX9 201 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 OR8K1Q8NGG5 319 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 OR5P3Q8WZ94 311 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 APOBEC3DQ96AK3 386 aaPredicted RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 CCDC127Q96BQ5 260 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 MRAP2Q96G30 205 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 PGLYRP3Q96LB9 341 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 ZNF436Q9C0F3 470 aaPredicted RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 CHMP4BQ9H444 224 aaKnown RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 POMKQ9H5K3 350 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 DMAC2Q9NW81 257 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 MRPL16Q9NX20 251 aaKnown RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 CLEC2DQ9UHP7 191 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 CYB5R1Q9UHQ9 305 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 SEC16AO15027 2179 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 CACNA1DQ01668 2161 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 PRR14LQ5THK1 2151 aa1.35□□□□□ -2.19
CD44-238ENST00000534296 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.35□□□□□ -2.19
CD44-238ENST00000534296 EIF4G1Q04637 1599 aaKnown RBP1.34□□□□□ -2.19
CD44-238ENST00000534296 SPATA31E1Q6ZUB1 1445 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 OR5H14A6NHG9 310 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.34□□□□□ -2.19
CD44-238ENST00000534296 CPSF4O95639 269 aaKnown RBP1.34□□□□□ -2.19
CD44-238ENST00000534296 CDS2O95674 445 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 CST4P01036 141 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 PDYNP01213 254 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 P0C880 135 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 PVALBP20472 110 aaPredicted RBP1.34□□□□□ -2.19
CD44-238ENST00000534296 LCN1P31025 176 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 MAGEA3P43357 314 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 AKR1C2P52895 323 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms