RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 J3KR12 359 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 GAPDHSO14556 408 aaPredicted RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 ARPC1BO15143 372 aaKnown RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 EEF1E1O43324 174 aaKnown RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 TMPRSS11DO60235 418 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 CEACAM4O75871 244 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 DIRAS1O95057 198 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 CNIH1O95406 144 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 PRSS56P0CW18 603 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 ZNF37AP17032 561 aaPredicted RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 TCN2P20062 427 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 GYG1P46976 350 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 RIPPLY3P57055 190 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 YPEL3P61236 119 aaPredicted RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 SUMO2P61956 95 aaKnown RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 ARG2P78540 354 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 LCN2P80188 198 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 TMEM267Q0VDI3 215 aaPredicted RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 EDDM3AQ14507 147 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 P2RY6Q15077 328 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 PMVKQ15126 192 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 PMCHL1Q16048 86 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 TNXAQ16473 311 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 UPP1Q16831 310 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 ZSWIM7Q19AV6 140 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 C6orf136Q5SQH8 315 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 DCST2Q5T1A1 773 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 GFI1BQ5VTD9 330 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 SLC27A1Q6PCB7 646 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 Q6ZSR9 355 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 MEPCEQ7L2J0 689 aaKnown RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 MOB1BQ7L9L4 216 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 CALHM3Q86XJ0 350 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 C1orf174Q8IYL3 243 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 SMIM20Q8N5G0 67 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 TTC9CQ8N5M4 171 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 BCORP1Q8N888 145 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 CDRT4Q8N9R6 151 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 BOLLQ8N9W6 283 aaKnown RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 CADM4Q8NFZ8 388 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 OR4L1Q8NH43 312 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 ZNRF2Q8NHG8 242 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 TVP23CQ96ET8 276 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 WDR34Q96EX3 536 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 ZNF681Q96N22 645 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 RCHY1Q96PM5 261 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 AQP10Q96PS8 301 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 TBX15Q96SF7 602 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 SPAG8Q99932 426 aaPredicted RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 DPY30Q9C005 99 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 IFI27L2Q9H2X8 130 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 MRPL17Q9NRX2 175 aaKnown RBP4.73□□□□□ -1.65
CD44-236ENST00000533222 ZNF226Q9NYT6 803 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 FLRT1Q9NZU1 646 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 DHDHQ9UQ10 334 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 CYSLTR1Q9Y271 337 aa4.73□□□□□ -1.65
CD44-236ENST00000533222 HELZP42694 1942 aaKnown RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 TRAV1-2A0A0B4J238 106 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 SMIM22K7EJ46 135 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 M0QZQ0 153 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 P2RY10O00398 339 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 RS1O15537 224 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 PRKNO60260 465 aaPredicted RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 SLC16A7O60669 478 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 JTBO76095 146 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 VIPP01282 170 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 IGLV2-14P01704 120 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 MAS1P04201 325 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 WNT2P09544 360 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 RAB40ALP0C0E4 278 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 SEC11BP0C7V7 166 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 NPPBP16860 134 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 WT1P19544 449 aaPredicted RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 GPD1P21695 349 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 NPY1RP25929 384 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 GUCA1AP43080 201 aaPredicted RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 REG1BP48304 166 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 AMTP48728 403 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 CX3CR1P49238 355 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 DIO3P55073 304 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 TPPP2P59282 170 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 RAB10P61026 200 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 RPL7AP62424 266 aaKnown RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 RHOBP62745 196 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 SEC11AP67812 179 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 EWSR1Q01844 656 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-236ENST00000533222 MEF2BQ02080 365 aaPredicted RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 ID2Q02363 134 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 RAB40BQ12829 278 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 ENDOGQ14249 297 aaKnown RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 POM121L1PQ3SYA9 428 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 FAM162BQ5T6X4 162 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 C1orf189Q5VU69 101 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 NIPAL3Q6P499 406 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 RNASEKQ6P5S7 137 aaKnown RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 BCDIN3DQ7Z5W3 292 aaKnown RBP4.72□□□□□ -1.65
CD44-236ENST00000533222 TMEM179BQ7Z7N9 219 aa4.72□□□□□ -1.65
CD44-236ENST00000533222 TMEM25Q86YD3 366 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms