RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SH2D7A6NKC9 451 aaPredicted RBP9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A9PA6NNJ1 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A12PA8MX19 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A5PA8MXJ8 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 E9PQ18 207 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 TOR1AO14656 332 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A15PP0C7V4 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A13PP0C7W8 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A14PP0C7W9 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM90A24PP0C7X0 464 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 CGB3P0DN86 165 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 CGB7P0DN87 165 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 MNDAP41218 407 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 OR3A4PP47883 348 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 KRTAP10-11P60412 298 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 ZP1P60852 638 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 SCN1BQ07699 218 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 EGFEM1PQ0D2K5 195 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 MRPL28Q13084 256 aaKnown RBP9.02□□□□□ -0.97
VPS28-214ENST00000531032 ALKBH1Q13686 389 aaKnown RBP9.02□□□□□ -0.97
VPS28-214ENST00000531032 GALEQ14376 348 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 ATXN7L3Q14CW9 347 aaPredicted RBP9.02□□□□□ -0.97
VPS28-214ENST00000531032 LHFPL3Q86UP9 236 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 TSEN15Q8WW01 171 aaKnown RBP9.02□□□□□ -0.97
VPS28-214ENST00000531032 CYGBQ8WWM9 190 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 KIRREL1Q96J84 757 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 PPIL3Q9H2H8 161 aaKnown RBP9.02□□□□□ -0.97
VPS28-214ENST00000531032 ZCCHC4Q9H5U6 513 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 AMBNQ9NP70 447 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 PCDHB16Q9NRJ7 776 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 FAM118AQ9NWS6 357 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 OR6C3Q9NZP0 311 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 EXOGQ9Y2C4 368 aaKnown RBP9.02□□□□□ -0.97
VPS28-214ENST00000531032 MYRFQ9Y2G1 1151 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 MOB4Q9Y3A3 225 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 HSPE1-MOB4S4R3N1 261 aa9.02□□□□□ -0.97
VPS28-214ENST00000531032 ERICH4A6NGS2 130 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 DEGS1O15121 323 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 SULT1B1O43704 296 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 CLIC3O95833 236 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 CCDC159P0C7I6 412 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 FAM106CPP0CH98 169 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 GABRB1P18505 474 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 GBX2P52951 348 aaPredicted RBP9.01□□□□□ -0.97
VPS28-214ENST00000531032 RAB40BQ12829 278 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 RBM39Q14498 530 aaKnown RBP9.01□□□□□ -0.97
VPS28-214ENST00000531032 KISS1Q15726 138 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 LRRC36Q1X8D7 754 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 KHDC1LQ5JSQ8 128 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 VAX1Q5SQQ9 334 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 ELP2Q6IA86 826 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 THNSL2Q86YJ6 484 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 SYS1Q8N2H4 156 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 PARP16Q8N5Y8 322 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 LINC00482Q8N8I6 264 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 OR51T1Q8NGJ9 327 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 OR9G1Q8NH87 305 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 RHOXF1Q8NHV9 184 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 RPEQ96AT9 228 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 NCOR1P1Q9H4R4 102 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 LINC00574Q9H8X3 128 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 ING3Q9NXR8 418 aa9.01□□□□□ -0.97
VPS28-214ENST00000531032 A0A1W2PPI3 338 aa9□□□□□ -0.97
VPS28-214ENST00000531032 WI2-2373I1.2A0A1W2PRP0 233 aa9□□□□□ -0.97
VPS28-214ENST00000531032 IRGMA1A4Y4 181 aa9□□□□□ -0.97
VPS28-214ENST00000531032 PSMB11A5LHX3 300 aa9□□□□□ -0.97
VPS28-214ENST00000531032 TMEM212A6NML5 194 aa9□□□□□ -0.97
VPS28-214ENST00000531032 H0YJX3 145 aa9□□□□□ -0.97
VPS28-214ENST00000531032 HCKP08631 526 aa9□□□□□ -0.97
VPS28-214ENST00000531032 RPSAP08865 295 aaKnown RBP9□□□□□ -0.97
VPS28-214ENST00000531032 TMEM225BP0DP42 221 aa9□□□□□ -0.97
VPS28-214ENST00000531032 MYL12AP19105 171 aa9□□□□□ -0.97
VPS28-214ENST00000531032 NFYBP25208 207 aa9□□□□□ -0.97
VPS28-214ENST00000531032 GLP1RP43220 463 aa9□□□□□ -0.97
VPS28-214ENST00000531032 MTNR1BP49286 362 aa9□□□□□ -0.97
VPS28-214ENST00000531032 PAX5Q02548 391 aa9□□□□□ -0.97
VPS28-214ENST00000531032 MED21Q13503 144 aa9□□□□□ -0.97
VPS28-214ENST00000531032 RCN1Q15293 331 aa9□□□□□ -0.97
VPS28-214ENST00000531032 KLHL22Q53GT1 634 aa9□□□□□ -0.97
VPS28-214ENST00000531032 C9orf152Q5JTZ5 239 aa9□□□□□ -0.97
VPS28-214ENST00000531032 ZNF691Q5VV52 312 aa9□□□□□ -0.97
VPS28-214ENST00000531032 ETV3LQ6ZN32 361 aa9□□□□□ -0.97
VPS28-214ENST00000531032 SERPINA12Q8IW75 414 aa9□□□□□ -0.97
VPS28-214ENST00000531032 ZNF565Q8N9K5 539 aa9□□□□□ -0.97
VPS28-214ENST00000531032 SETD9Q8NE22 299 aa9□□□□□ -0.97
VPS28-214ENST00000531032 OR52I1Q8NGK6 324 aa9□□□□□ -0.97
VPS28-214ENST00000531032 OR5D14Q8NGL3 314 aa9□□□□□ -0.97
VPS28-214ENST00000531032 HAVCR2Q8TDQ0 301 aa9□□□□□ -0.97
VPS28-214ENST00000531032 TOMM40LQ969M1 308 aa9□□□□□ -0.97
VPS28-214ENST00000531032 C8orf4Q9NR00 106 aa9□□□□□ -0.97
VPS28-214ENST00000531032 ERVK13-1Q9NX77 482 aa9□□□□□ -0.97
VPS28-214ENST00000531032 CALYQ9NYX4 217 aa9□□□□□ -0.97
VPS28-214ENST00000531032 DHDHQ9UQ10 334 aa9□□□□□ -0.97
VPS28-214ENST00000531032 AMMECR1Q9Y4X0 333 aaPredicted RBP9□□□□□ -0.97
VPS28-214ENST00000531032 NBEAL2Q6ZNJ1 2754 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 MEIKINA0A087WXM9 373 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 TRAV24A0A0B4J272 114 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 NPIPB11E5RHQ5 1161 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 J3QR06 171 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 HSPB6O14558 160 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms