RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 KCNIP4Q6PIL6 250 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 DMRT1Q9Y5R6 373 aa10.24□□□□□ -0.77
SYNPO-204ENST00000519664 MDFIC2A0A1B0GVS7 189 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 PPP5D1E7EU14 171 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 C1QL1O75973 258 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 RPS11P62280 158 aaKnown RBP eCLIP10.23□□□□□ -0.77
SYNPO-204ENST00000519664 GAPTQ8N292 157 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF485Q8NCK3 441 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 MRGPRDQ8TDS7 321 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 IP6K3Q96PC2 410 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 UHRF2Q96PU4 802 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 PSG11Q9UQ72 335 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 WSB1Q9Y6I7 421 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 A0A1W2PR77 199 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 PRR32B1ATL7 298 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 SSX7Q7RTT5 188 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 FAM181AQ8N9Y4 354 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 CHST5Q9GZS9 411 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 NPIPB9F8W1W9 429 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 PPYP01298 95 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 SLC25A4P12235 298 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 BCL3P20749 454 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 ZBTB25P24278 435 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 DVL1P1P54792 670 aaPredicted RBP10.23□□□□□ -0.77
SYNPO-204ENST00000519664 TBC1D26Q86UD7 250 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 RBMXL3Q8N7X1 1067 aaKnown RBP10.23□□□□□ -0.77
SYNPO-204ENST00000519664 MRPS24Q96EL2 167 aaKnown RBP10.23□□□□□ -0.77
SYNPO-204ENST00000519664 KLHDC3Q9BQ90 382 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 OR2H1Q9GZK4 316 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 GPR35Q9HC97 309 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 OR5AC2Q9NZP5 309 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 HS3ST3B1Q9Y662 390 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 WDR90Q96KV7 1748 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 CBY3A6NI87 242 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 M0R1X1 148 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 SOX8P57073 446 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF528Q3MIS6 628 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF260Q3ZCT1 412 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 LBHQ53QV2 105 aaPredicted RBP10.23□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF660Q6AZW8 331 aaPredicted RBP10.23□□□□□ -0.77
SYNPO-204ENST00000519664 PIK3IP1Q96FE7 263 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 ZPBPQ9BS86 351 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 TMEM38BQ9NVV0 291 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 V9GYS6 101 aa10.23□□□□□ -0.77
SYNPO-204ENST00000519664 TRBV5-7A0A0A0MS05 114 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 KLK10O43240 276 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 CHST1O43916 411 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF92Q03936 586 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF658BQ4V348 819 aaPredicted RBP10.22□□□□□ -0.77
SYNPO-204ENST00000519664 COMMD1Q8N668 190 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 OIT3Q8WWZ8 545 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 SLC7A10Q9NS82 523 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 PTPRDP23468 1912 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 DNAH12Q6ZR08 3092 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 NOVA1P51513 510 aaKnown RBP10.22□□□□□ -0.77
SYNPO-204ENST00000519664 PSG4Q00888 419 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 TGIF1Q15583 401 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 C2orf68Q2NKX9 166 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF574Q6ZN55 896 aaPredicted RBP10.22□□□□□ -0.77
SYNPO-204ENST00000519664 SMIM15Q7Z3B0 74 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 TMEM18Q96B42 140 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 RAB33BQ9H082 229 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 ATP23Q9Y6H3 246 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 SIP14410 1827 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 HEATR5AQ86XA9 2040 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 NKX2-6A6NCS4 301 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 A8MXK9 166 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 M0R143 59 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 CTSDP07339 412 aaPredicted RBP10.22□□□□□ -0.77
SYNPO-204ENST00000519664 PGA4P0DJD7 388 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 PGA3P0DJD8 388 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 TMEM11P17152 192 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 RAB5AP20339 215 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 LPAR6P43657 344 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 HES1Q14469 280 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF124Q15973 351 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 BTNL3Q6UXE8 466 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 APCDD1LQ8NCL9 501 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 TPPP3Q9BW30 176 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 COLQQ9Y215 455 aaPredicted RBP10.22□□□□□ -0.77
SYNPO-204ENST00000519664 NOTCH4Q99466 2003 aa10.22□□□□□ -0.77
SYNPO-204ENST00000519664 OR7C2O60412 319 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 FCGR3BO75015 233 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 AGFG2O95081 481 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 NHLH2Q02577 135 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 GUCA2BQ16661 112 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 ETFRF1Q6IPR1 90 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 TPRX1Q8N7U7 411 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF519Q8TB69 540 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 RBM14Q96PK6 669 aaKnown RBP10.21□□□□□ -0.77
SYNPO-204ENST00000519664 SPSB2Q99619 263 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 MSL2Q9HCI7 577 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 TNFSF18Q9UNG2 199 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 TRAF3IP2O43734 574 aaPredicted RBP10.21□□□□□ -0.77
SYNPO-204ENST00000519664 SLC25A6P12236 298 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 ZNF25P17030 456 aaPredicted RBP10.21□□□□□ -0.77
SYNPO-204ENST00000519664 DHODHQ02127 395 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 SNAI3Q3KNW1 292 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 FAHD2BQ6P2I3 314 aaPredicted RBP10.21□□□□□ -0.77
SYNPO-204ENST00000519664 BAGE3Q86Y29 109 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms