RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 FAM3DQ96BQ1 224 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 DMRTB1Q96MA1 342 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 C1orf147Q96MC9 270 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF714Q96N38 554 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 NEDD4LQ96PU5 975 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 SLC6A7Q99884 636 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 BARHL1Q9BZE3 327 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 RNF167Q9H6Y7 350 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 METTL8Q9H825 291 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 SPACA1Q9HBV2 294 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF69Q9UC07 566 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 PEX16Q9Y5Y5 336 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 ODAMA1E959 279 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 ERP29P30040 261 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 SDC2P34741 201 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 NCR3LG1Q68D85 454 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 RAB12Q6IQ22 244 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 RBMS3Q6XE24 437 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 Q8N7P7 452 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF418Q8TF45 676 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 YIPF6Q96EC8 236 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 COQ2Q96H96 371 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 Q96M66 194 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 URM1Q9BTM9 101 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 CENPOQ9BU64 300 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 KIF25Q9UIL4 384 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 LINC00312Q9Y6C7 94 aa9.38□□□□□ -0.91
LIMCH1-210ENST00000509454 A0A0B4J203 849 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 IGHV1-69DA0A0B4J2H0 117 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 CENPVL3A0A0U1RRI6 287 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 UBE2QL1A1L167 161 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 IFITM5A6NNB3 132 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 H3BUI4 141 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 FSHBP01225 129 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 IGHV1-69P01742 117 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 CSN2P05814 226 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 SLC2A2P11168 524 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 FUT3P21217 361 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 KCNJ3P48549 501 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 ERVFRD-1P60508 538 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 RPS27AP62979 156 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 GUCA2AQ02747 115 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 UNC119Q13432 240 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 RBM39Q14498 530 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 C2orf76Q3KRA6 126 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 C1orf122Q6ZSJ8 110 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 OR2W3Q7Z3T1 314 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 TPRA1Q86W33 373 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 BCL6BQ8N143 479 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 PLPPR1Q8TBJ4 325 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 CCDC107Q8WV48 283 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 SLC25A28Q96A46 364 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 SUCNR1Q9BXA5 334 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 GAL3ST2Q9H3Q3 398 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 IFT22Q9H7X7 185 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 HEXA-AS1Q9H8Q6 139 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 ETAA1Q9NY74 926 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 PLA2G2EQ9NZK7 142 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 OR6C3Q9NZP0 311 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 DAPK2Q9UIK4 370 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 UBE2J1Q9Y385 318 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 JMJD1CQ15652 2540 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 KIAA2026Q5HYC2 2103 aa9.37□□□□□ -0.91
LIMCH1-210ENST00000509454 TRAV39A0A0B4J263 110 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 TMEM30CPA0ZSE6 113 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A10PA6NDY2 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A18PA6NE21 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A16PA6NEW6 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A20PA6NIJ5 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A8PA6NJQ4 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A7PA6NKC0 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 TRIM64CA6NLI5 447 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 NOTOA8MTQ0 251 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A22PA8MWA6 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 TMEM14DPA8MWL7 114 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A12PA8MX19 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A5PA8MXJ8 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A23PA8MXZ1 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 AIPO00170 330 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 PDCD6O75340 191 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 CLEC2LP0C7M8 214 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A15PP0C7V4 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A13PP0C7W8 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A14PP0C7W9 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM90A24PP0C7X0 464 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 PRTN3P24158 256 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 PRAMEF5Q5TYX0 476 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 GDPGP1Q6ZNW5 385 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 TCF23Q7RTU1 214 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 GPR141Q7Z602 305 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 PNKDQ8N490 385 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 MRGPRDQ8TDS7 321 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 DYRK2Q92630 601 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 NICN1Q9BSH3 213 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FUNDC2Q9BWH2 189 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 LIN7BQ9HAP6 207 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM96BQ9Y3D0 163 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 SOX21Q9Y651 276 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 TMEM272A0A1B0GTI8 110 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 RNASEK-C17orf49H0YIS7 233 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms