RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 HKR1P10072 659 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 RCC1P18754 421 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-207ENST00000507401 KITLGP21583 273 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 SLC6A6P31641 620 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 MPV17P39210 176 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 CDKN2AP42771 156 aaKnown RBP6.78□□□□□ -1.32
SCN1A-207ENST00000507401 LCN6P62502 163 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 HIST1H3AP68431 136 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 PSG7Q13046 419 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 ALKBH6Q3KRA9 238 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 ACSM3Q53FZ2 586 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 TMEM255AQ5JRV8 349 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 HIST2H3PS2Q5TEC6 136 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 LIPNQ5VXI9 398 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 RPL22L1Q6P5R6 122 aaKnown RBP6.78□□□□□ -1.32
SCN1A-207ENST00000507401 C11orf88Q6PI97 169 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 Q6ZTK2 550 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 HIST2H3AQ71DI3 136 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 SLC36A1Q7Z2H8 476 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 LDLRAD3Q86YD5 345 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 RFLNBQ8N5W9 214 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 TEX29Q8N6K0 151 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 OR5L1Q8NGL2 311 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 OR1F12Q8NHA8 337 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 NANPQ8TBE9 248 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 GTF3AQ92664 365 aaKnown RBP6.78□□□□□ -1.32
SCN1A-207ENST00000507401 TMEM186Q96B77 213 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 RASD2Q96D21 266 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 HAVCR1Q96D42 359 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 TIMD4Q96H15 378 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 RBM14Q96PK6 669 aaKnown RBP6.78□□□□□ -1.32
SCN1A-207ENST00000507401 S100A13Q99584 98 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 GPA33Q99795 319 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 CHIAQ9BZP6 476 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 SMDT1Q9H4I9 107 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 RERGLQ9H628 205 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 SAP30LQ9HAJ7 183 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 PLEK2Q9NYT0 353 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 TNFSF18Q9UNG2 199 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 B9D1Q9UPM9 204 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 COA3Q9Y2R0 106 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-207ENST00000507401 KPTNQ9Y664 436 aa6.78□□□□□ -1.32
SCN1A-207ENST00000507401 SHISA3A0PJX4 238 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 FAM157AC9JC47 383 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 MFNGO00587 321 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 SPRY3O43610 288 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 DOK2O60496 412 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 RENP00797 406 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 IFNA17P01571 189 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 AKAIN1P0CW23 69 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 RAC2P15153 192 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 TNFRSF1AP19438 455 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 TNFSF4P23510 183 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 PTGFRP43088 359 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 GLP1RP43220 463 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 HTR5AP47898 357 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 SRP9P49458 86 aaKnown RBP6.77□□□□□ -1.33
SCN1A-207ENST00000507401 SPCS3P61009 180 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 GLO1Q04760 184 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 SPATA46Q5T0L3 261 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 TMEM244Q5VVB8 128 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 UNQ9370/PRO34162Q6UXP9 181 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 ZNF620Q6ZNG0 422 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 PEG10Q86TG7 708 aaKnown RBP6.77□□□□□ -1.33
SCN1A-207ENST00000507401 OR51F2Q8NH61 342 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 CCL17Q92583 94 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 RAB39BQ96DA2 213 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 SMIM19Q96E16 107 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 SAMD8Q96LT4 415 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 OR52D1Q9H346 318 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 ZNF665Q9H7R5 613 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 HIF1ANQ9NWT6 349 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 GFOD1Q9NXC2 390 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 MTFP1Q9UDX5 166 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 IL20RAQ9UHF4 553 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 PCDHB10Q9UN67 800 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 STARD10Q9Y365 291 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 CBY1Q9Y3M2 126 aa6.77□□□□□ -1.33
SCN1A-207ENST00000507401 IGLV1-36A0A0B4J1U3 117 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 A0A1B0GWJ7 208 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 MEX3AA1L020 520 aaKnown RBP6.76□□□□□ -1.33
SCN1A-207ENST00000507401 IFITM5A6NNB3 132 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 F8VVB4 439 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 F8VWA3 439 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 IFNL4K9M1U5 179 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 AP4M1O00189 453 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 DCTN6O00399 190 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 TAAR5O14804 337 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 WNT9BO14905 357 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 RER1O15258 196 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 MAGEB4O15481 346 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-207ENST00000507401 XRCC3O43542 346 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 TIMM8AO60220 97 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-207ENST00000507401 CLN5O75503 358 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 SPDEFO95238 335 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 MPZL1O95297 269 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 GSTP1P09211 210 aaKnown RBP6.76□□□□□ -1.33
SCN1A-207ENST00000507401 OR2T7P0C7T2 308 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 RAB6AP20340 208 aa6.76□□□□□ -1.33
SCN1A-207ENST00000507401 GATA3P23771 443 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms