RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ATRNO75882 1429 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 IGHV1-45A0A0A0MS14 117 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 OR5H14A6NHG9 310 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 POP7O75817 140 aaKnown RBP1.34□□□□□ -2.19
VPS50-219ENST00000495039 CSTAP01040 98 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 GUSBP08236 651 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 SLC2A1P11166 492 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 ZNF22P17026 224 aaPredicted RBP1.34□□□□□ -2.19
VPS50-219ENST00000495039 GZMHP20718 246 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 GCLMP48507 274 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 TTPAP49638 278 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 C2orf80Q0P641 193 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 ZNF322Q6U7Q0 402 aaPredicted RBP1.34□□□□□ -2.19
VPS50-219ENST00000495039 FER1L6-AS1Q8NA97 138 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 OR10D4PQ8NGN7 298 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 LGALS14Q8TCE9 139 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 LMX1AQ8TE12 382 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 CPB2Q96IY4 423 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 PITX2Q99697 317 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 OR2D2Q9H210 308 aa1.34□□□□□ -2.19
VPS50-219ENST00000495039 CHTOPQ9Y3Y2 248 aaKnown RBP1.34□□□□□ -2.19
VPS50-219ENST00000495039 IGHV2-26A0A0B4J1V2 119 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 ZMPSTE24O75844 475 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 GYPCP04921 128 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 IGKV5-2P06315 115 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 PSKH1P11801 424 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 CBX5P45973 191 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 CEACAM21Q3KPI0 293 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 ZCWPW2Q504Y3 356 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 CAVIN4Q5BKX8 364 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 HBMQ6B0K9 141 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 LAIR2Q6ISS4 152 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 NOXRED1Q6NXP6 359 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 SPICQ8N5J4 248 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 OR4K13Q8NH42 304 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 CMBLQ96DG6 245 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 GLT1D1Q96MS3 346 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 BIRC8Q96P09 236 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 LRRC19Q9H756 370 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 TUBA4BQ9H853 241 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 ZNF337Q9Y3M9 751 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 CEP170Q5SW79 1584 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 BAHCC1Q9P281 2608 aa1.33□□□□□ -2.2
VPS50-219ENST00000495039 COL5A3P25940 1745 aaPredicted RBP1.32□□□□□ -2.2
VPS50-219ENST00000495039 KLRC4-KLRK1H3BQV0 150 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 I3L4J1 428 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 hCG_2039718K7EN88 272 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 EEF1E1O43324 174 aaKnown RBP1.32□□□□□ -2.2
VPS50-219ENST00000495039 SH2D1AO60880 128 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 CRTAPO75718 401 aaPredicted RBP1.32□□□□□ -2.2
VPS50-219ENST00000495039 CD99P14209 185 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 CCNOP22674 350 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 PLTPP55058 493 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 HBG1P69891 147 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 HBG2P69892 147 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 MMDQ15546 238 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 ELP2Q6IA86 826 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 OR4K17Q8NGC6 315 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.32□□□□□ -2.2
VPS50-219ENST00000495039 HIST1H2BAQ96A08 127 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 ZMYND19Q96E35 227 aaPredicted RBP1.32□□□□□ -2.2
VPS50-219ENST00000495039 HINT2Q9BX68 163 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 SUCNR1Q9BXA5 334 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 TSSK6Q9BXA6 273 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 ARL6Q9H0F7 186 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 MFSD1Q9H3U5 465 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 TMBIM4Q9HC24 238 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 KCNIP2Q9NS61 270 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 TMEM106BQ9NUM4 274 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 RMND1Q9NWS8 449 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 POMPQ9Y244 141 aa1.32□□□□□ -2.2
VPS50-219ENST00000495039 ARAP3Q8WWN8 1544 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 A0A1B0GTI1 187 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 RAB19A4D1S5 217 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 MGAT4DA6NG13 374 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 ARGFXA6NJG6 315 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 TP53I11O14683 189 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 UBDO15205 165 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 TCF21O43680 179 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 PDCD6O75340 191 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 CA2P00918 260 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 ZNF3P17036 446 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 PSMB9P28065 219 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 RPA3P35244 121 aaPredicted RBP1.31□□□□□ -2.2
VPS50-219ENST00000495039 NUP62P37198 522 aaPredicted RBP1.31□□□□□ -2.2
VPS50-219ENST00000495039 RHOAP61586 193 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 VSNL1P62760 191 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 BAXQ07812 192 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 TRIP13Q15645 432 aaPredicted RBP1.31□□□□□ -2.2
VPS50-219ENST00000495039 C10orf91Q5T1B1 145 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 NIPAL1Q6NVV3 410 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 SSX6Q7RTT6 188 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 OLIG3Q7RTU3 272 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 NIT1Q86X76 327 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 ZNF567Q8N184 647 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 OR11G2Q8NGC1 345 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 OR4A5Q8NH83 315 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 OR2V1Q8NHB1 315 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 REEP6Q96HR9 211 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 B9D2Q9BPU9 175 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms